Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26270 122 / 5e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1) AT2G03890 115 / 1e-30 UBDKGAMMA7, ATPI4KGAMMA7 ,PI4K GAMMA 7 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) AT1G13640 82 / 8e-19 Phosphatidylinositol 3- and 4-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000012 [exp] 222 / 8e-76 AT1G26270 122 / 3e-33 Phosphatidylinositol 3- and 4-kinase family protein (.1) Lus10019197 [exp] 222 / 9e-70 AT2G03890 873 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10036834 [exp] 221 / 1e-69 AT2G03890 874 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Lus10005095 [exp] 80 / 4e-18 AT2G03890 700 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G137400 [exp] 143 / 1e-40 AT2G03890 917 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.008G112200 [exp] 117 / 4e-31 AT2G03890 866 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2) Potri.017G101500 [exp] 91 / 8e-22 AT2G03890 737 / 0.0 UBIQUITIN-LIKE DOMAIN KINASE GAMMA 7, phosphoinositide 4-kinase gamma 7 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000011 pacid=23145641 polypeptide=Lus10000011 locus=Lus10000011.g ID=Lus10000011.BGIv1.0 annot-version=v1.0 ATGGGTCGTAGCATGCTTTCGAAGCTTGACGAAAGCGTAGAGGAGGAAGAAGAAGCAGAGAGTGAAGGAGAGGACGGGCGAGAGGAATTTGCGGCAGCTC TCCCTGCTGCTGCTCCAGTGAACTTCCCGTCGATTTCGATGCTCTCTGCATCTCTGAAGGATACAAAGCTGAGTGACAAGACCCCCAAGTATCCGAAATT CTCAGGCGTTTCCAAGCCAGAGAATGGGTACTTATTAACAAACTCGTCATCAGGGCACAGGAGTGCGAACGAGCAGCTTCCTTCGAGTGTGAGCTTTGTG AACCTTGTGGATATGCCTGAGGAGGAGTGGGGGATGTTCATGGAGAAGCTGCAGGAGCTGATGTATCCAGCGTTTGCAAAGCGAAAGTCGGTGACTTTAG GGCAGAAGCTGAGGCAGAGGCTTGGGACTTCATGCCAGTTTTGA
AA sequence Show only first row Show all	>Lus10000011 pacid=23145641 polypeptide=Lus10000011 locus=Lus10000011.g ID=Lus10000011.BGIv1.0 annot-version=v1.0 MGRSMLSKLDESVEEEEEAESEGEDGREEFAAALPAAAPVNFPSISMLSASLKDTKLSDKTPKYPKFSGVSKPENGYLLTNSSSGHRSANEQLPSSVSFV NLVDMPEEEWGMFMEKLQELMYPAFAKRKSVTLGQKLRQRLGTSCQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000011 [exp]	0	1
AT1G26270			Phosphatidylinositol 3- and 4-...		Lus10000012 [exp]	1.0	0.9171
AT5G57900		SKIP1	SKP1 interacting partner 1 (.1...		Lus10019104 [exp]	5.3	0.8554
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10036739 [exp]	7.2	0.8760
AT5G49400			zinc knuckle (CCHC-type) famil...		Lus10016879 [exp]	7.3	0.8554
AT2G26920			Ubiquitin-associated/translati...		Lus10026781 [exp]	8.9	0.9029
AT3G12630		SAP5	stress associated protein 5, A...		Lus10037702 [exp]	9.6	0.8518
AT2G01140		PDE345	PIGMENT DEFECTIVE 345, Aldolas...		Lus10035247 [exp]	10.9	0.8833
AT1G21770			Acyl-CoA N-acyltransferases (N...		Lus10025670 [exp]	11.5	0.8870
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	14.7	0.8853
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	14.7	0.8968

Compare expression of checked genes

Lus10000011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.