Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 181 / 6e-54 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 167 / 2e-50 unknown protein AT1G02110 71 / 5e-15 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 66 / 5e-13 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G35240 56 / 2e-09 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT3G60320 55 / 3e-09 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 49 / 2e-07 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 48 / 8e-07 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT4G39790 47 / 1e-06 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 41 / 0.0001 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002864 [exp] 288 / 5e-100 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10038627 [exp] 291 / 1e-98 AT5G25590 538 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10037901 [exp] 284 / 7e-96 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10022116 [exp] 248 / 2e-79 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 174 / 3e-51 AT1G52320 652 / 0.0 unknown protein Lus10035887 [exp] 173 / 4e-51 AT1G52320 747 / 0.0 unknown protein Lus10028431 [exp] 68 / 9e-14 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 67 / 2e-13 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10042910 [exp] 65 / 9e-13 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 204 / 2e-62 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 199 / 1e-60 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 178 / 3e-53 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 176 / 3e-52 AT1G52320 615 / 0.0 unknown protein Potri.007G056700 [exp] 73 / 1e-15 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.005G112300 [exp] 70 / 1e-14 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 68 / 9e-14 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 65 / 7e-13 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 65 / 8e-13 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 62 / 9e-12 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10000014 pacid=23161783 polypeptide=Lus10000014 locus=Lus10000014.g ID=Lus10000014.BGIv1.0 annot-version=v1.0 ATGTGGGGGAACATGTCGATCCACCACGAAAGCCAGCTAAAGATTGTAATGGACCTTAAAACGCTTGATGTCGCCCATGCCATTAAAGAAACAACGAGGC ACCACCACGAACAGACCAGCCAACTATGTGATGTTGTCGAGAAATGGAATGCACAGTTCGATAAGCTTGTGACGTATCAAAAGCAATACATCAATTGTCT CAATAGCTGGTTAAAGCTAAACCTCATCCCCATAGAAAGCAGCTTGAAAGAGAAGATATCATCCCCGCAACGAGTCGTGAATCCCCCAATCCAACCCCTT CTTCATGCATGGCACGACCATCTCGAAAGGCTACCAGACGAGCTTGCCAAAACTGCAATCTCTTCTTTCGAGGCCGTGATCAGAACCATTAAAGTACACC AAGAAGAAGAGATGAAGCTAAAGGAGAGATGTGAAGAAACTAGAAAGGAGTATGATTGA
AA sequence Show only first row Show all	>Lus10000014 pacid=23161783 polypeptide=Lus10000014 locus=Lus10000014.g ID=Lus10000014.BGIv1.0 annot-version=v1.0 MWGNMSIHHESQLKIVMDLKTLDVAHAIKETTRHHHEQTSQLCDVVEKWNAQFDKLVTYQKQYINCLNSWLKLNLIPIESSLKEKISSPQRVVNPPIQPL LHAWHDHLERLPDELAKTAISSFEAVIRTIKVHQEEEMKLKERCEETRKEYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	1.0	0.9715
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	1.7	0.8855
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	2.0	0.9371
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	5.3	0.8514
AT2G45250			Integral membrane protein hemo...		Lus10003319 [exp]	5.5	0.8589
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	5.7	0.8757
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	9.5	0.8381
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	10.6	0.8412
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	12.0	0.8342
AT1G01880			5'-3' exonuclease family prote...		Lus10041375 [exp]	16.3	0.7875

Compare expression of checked genes

Lus10000014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.