Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09060 67 / 3e-13 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 62 / 1e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G53700 59 / 2e-10 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53330 58 / 3e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G43820 58 / 3e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02420 57 / 5e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 57 / 7e-10 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G06580 57 / 1e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 56 / 2e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G04760 56 / 2e-09 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002951 [exp] 307 / 2e-104 AT5G61990 80 / 7e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003515 [exp] 296 / 3e-100 AT3G62470 80 / 6e-16 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 67 / 3e-13 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 66 / 6e-13 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 66 / 7e-13 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 62 / 1e-11 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 61 / 5e-11 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034419 [exp] 61 / 7e-11 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042452 [exp] 60 / 7e-11 AT1G53330 442 / 1e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075900 [exp] 109 / 2e-28 AT1G05670 89 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.001G236800 [exp] 71 / 1e-14 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 64 / 3e-12 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G109500 [exp] 62 / 1e-11 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G014500 [exp] 62 / 2e-11 AT1G09820 696 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G147700 [exp] 62 / 2e-11 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G090400 [exp] 57 / 6e-10 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 57 / 6e-10 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 57 / 8e-10 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019300 [exp] 57 / 8e-10 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000015 pacid=23156259 polypeptide=Lus10000015 locus=Lus10000015.g ID=Lus10000015.BGIv1.0 annot-version=v1.0 ATGCTGAGTGATGTAGGTGGGAGGGTTTACCTTACTGGTGTTCAATCCTTGGTCGAATTGCTTGCGAATTTGGTCTCGTTCAAAATGGCAAAGTTCGTGA TTGGTTTATCGGACAAGAGAGTGTCTTATCACAGTGTATTGATCAAGGAAATGTGCAAGAAGCACGAGTTTGAACAAGCGATGAAGGAAATCGACGAGAT GAAGGGATTCTACGGGGATGCATGCAATCCCAATTGTCGAAGCATTTACAATTACATGATCAGCACGATGCTCAAGGCCGGCAAGGAAGATGCTTCTGTG GAAGTTCTGCATGAGATGACGAGGAAAGGGCTTCCTCCGGATGCGTTGACTTTCGAGATACTTATATGCAATTCCGTGGCGAAGAAGGAGTTCGGGACTG TGATTAAGTTCTTTGACTCGATGGTGGAGGCCGGGGTTGAGCCCAGGAGGTCGACTCACACCACGTTGTTGAAGGTTTCTTTGACTTGGGGCAGAACGAG GAAGCTTATAGCTATGCGGTTGCTGTGA
AA sequence Show only first row Show all	>Lus10000015 pacid=23156259 polypeptide=Lus10000015 locus=Lus10000015.g ID=Lus10000015.BGIv1.0 annot-version=v1.0 MLSDVGGRVYLTGVQSLVELLANLVSFKMAKFVIGLSDKRVSYHSVLIKEMCKKHEFEQAMKEIDEMKGFYGDACNPNCRSIYNYMISTMLKAGKEDASV EVLHEMTRKGLPPDALTFEILICNSVAKKEFGTVIKFFDSMVEAGVEPRRSTHTTLLKVSLTWGRTRKLIAMRLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10000015 [exp]	0	1
AT3G62470			Pentatricopeptide repeat (PPR)...		Lus10003515 [exp]	13.7	0.7276
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	14.2	0.7679
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	14.7	0.7314
					Lus10032581 [exp]	17.5	0.7283
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	21.4	0.7215
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	24.6	0.7214
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	46.5	0.6919
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	52.2	0.7083
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10002561 [exp]	59.7	0.6815
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	68.0	0.6893

Compare expression of checked genes

Lus10000015 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.