Plant FIBer expression Database

Lus10000017 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24495 87 / 2e-21 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017724
[exp]
128 / 9e-36 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Lus10033095
[exp]
115 / 2e-31 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G156314
[exp]
86 / 6e-21 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
Potri.006G159200
[exp]
84 / 2e-20 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1)
PFAM info
Representative CDS sequence
>Lus10000017 pacid=23157958 polypeptide=Lus10000017 locus=Lus10000017.g ID=Lus10000017.BGIv1.0 annot-version=v1.0
ATGCAGATAGCATTAATGGCTGGGATACCGGAGCAGGTGGTGGAAAGAGCTTCACAGGCAGCTGGAGTGATGCATGAGTCGGTTGGGGAAAGCTTCAAGA
TGAGCGAGCAGAGGGCTGAGTTCTCAACTCTGCATGAAGAATGGGTGAGGAGCCTGGTGAACCTGGTTAGAGGAGCAGAGCAGGAAAGCAAGTTTGAAGA
ACTGGACAAGGATGATGATTTTGACACATTGGTTTGCTTGTGGCACGAGCTCAGGAGTGTTCGTGGACTGACCAAATGA
AA sequence
>Lus10000017 pacid=23157958 polypeptide=Lus10000017 locus=Lus10000017.g ID=Lus10000017.BGIv1.0 annot-version=v1.0
MQIALMAGIPEQVVERASQAAGVMHESVGESFKMSEQRAEFSTLHEEWVRSLVNLVRGAEQESKFEELDKDDDFDTLVCLWHELRSVRGLTK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24495 ATMSH7, MSH7, M... MUTS HOMOLOG 6-2, ARABIDOPSIS ... Lus10000017
[exp]
0 1
AT3G25440 LOH1 LAG One Homologue 1, RNA-bindi... Lus10009566
[exp]
1.0 0.7882
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10000381
[exp]
6.0 0.7378
AT3G42860 zinc knuckle (CCHC-type) famil... Lus10030560
[exp]
7.5 0.7326
AT5G55410 Bifunctional inhibitor/lipid-t... Lus10016582
[exp]
14.1 0.7391
AT3G25180 CYP82G1 cytochrome P450, family 82, su... Lus10016287
[exp]
17.1 0.7228
AT5G61000 ATRPA70D Replication factor-A protein 1... Lus10003025
[exp]
17.6 0.7320
AT5G27870 Plant invertase/pectin methyle... Lus10020313
[exp]
25.3 0.7296
AT4G18335 unknown protein Lus10028125
[exp]
28.6 0.6448
AT1G18530 EF hand calcium-binding protei... Lus10027243
[exp]
34.6 0.6646
AT1G79800 AtENODL7 early nodulin-like protein 7 (... Lus10011433
[exp]
37.3 0.6536

Lus10000017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.