Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 127 / 2e-34 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT5G59090 126 / 3e-34 ATSBT4.12 subtilase 4.12 (.1.2.3) AT5G59190 126 / 4e-34 subtilase family protein (.1) AT5G58820 124 / 2e-33 Subtilisin-like serine endopeptidase family protein (.1) AT5G03620 124 / 2e-33 Subtilisin-like serine endopeptidase family protein (.1) AT5G59130 123 / 4e-33 Subtilase family protein (.1.2) AT5G58830 122 / 5e-33 Subtilisin-like serine endopeptidase family protein (.1) AT5G67090 119 / 8e-32 Subtilisin-like serine endopeptidase family protein (.1) AT4G00230 119 / 1e-31 XSP1 xylem serine peptidase 1 (.1) AT5G59120 118 / 3e-31 ATSBT4.13 subtilase 4.13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029568 [exp] 273 / 1e-91 AT5G67360 166 / 1e-44 Subtilase family protein (.1) Lus10002242 [exp] 279 / 9e-91 AT5G67360 555 / 0.0 Subtilase family protein (.1) Lus10029577 [exp] 226 / 6e-75 AT1G04110 179 / 9e-51 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006310 [exp] 233 / 2e-73 AT5G67360 542 / 0.0 Subtilase family protein (.1) Lus10029580 [exp] 231 / 3e-72 AT5G67360 536 / 0.0 Subtilase family protein (.1) Lus10002243 [exp] 219 / 2e-71 AT1G04110 248 / 4e-75 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006307 [exp] 225 / 5e-70 AT5G67360 532 / 2e-179 Subtilase family protein (.1) Lus10002244 [exp] 226 / 2e-69 AT5G67360 567 / 0.0 Subtilase family protein (.1) Lus10006306 [exp] 226 / 2e-69 AT5G67360 555 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G006570 [exp] 173 / 5e-51 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G113700 [exp] 167 / 1e-48 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118700 [exp] 164 / 1e-47 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 152 / 3e-43 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 149 / 4e-42 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.002G256300 [exp] 129 / 2e-35 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.001G469000 [exp] 123 / 4e-33 AT5G59810 754 / 0.0 Subtilase family protein (.1) Potri.014G026600 [exp] 121 / 2e-32 AT5G67360 546 / 0.0 Subtilase family protein (.1) Potri.001G468900 [exp] 121 / 2e-32 AT5G59810 730 / 0.0 Subtilase family protein (.1) Potri.009G038001 [exp] 121 / 2e-32 AT3G46850 794 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [flax] [poplar] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Lus10000018 pacid=23164978 polypeptide=Lus10000018 locus=Lus10000018.g ID=Lus10000018.BGIv1.0 annot-version=v1.0 ATGATCATTGGTGTTATTGATGGTGGCATCAAGCACGATCACCCTTCGTTTGACGATAGAGGTATGCCTCCACCACCTGCAAGATGGAAAGGAAAGTGCG AGTTCAATGGGAAGAAGACTTGTAACAACAAGCTTATAGGTGCTAGAAGCTTTGTTTCTCCGGGGGATATCCCGTCGGAAGATACTCTCCATGGGACTCA TATTGCTGGAGAAGCTGGTGGGATTTCTGTGGAACGTGCCAATGTGTTTGGACAAGCTAACGGAACTGCGATGGGGATCGCACCGTTTGCCCACTTGGAG ATGTACAAGGTTTGTGGAACTAGTTCTGAATGCATGGAGAGTACAGTATTGGCAGCAATTGATGCTGCTATAGAGGATGGTGTTGATGTGCTTTCAATGT CACTTGCATTTCAATATGATAATTTGTATGATTTGTTATTGCATTGGGTGCATTTAGAGCCATTCAAAATGGCATCTTTGTGA
AA sequence Show only first row Show all	>Lus10000018 pacid=23164978 polypeptide=Lus10000018 locus=Lus10000018.g ID=Lus10000018.BGIv1.0 annot-version=v1.0 MIIGVIDGGIKHDHPSFDDRGMPPPPARWKGKCEFNGKKTCNNKLIGARSFVSPGDIPSEDTLHGTHIAGEAGGISVERANVFGQANGTAMGIAPFAHLE MYKVCGTSSECMESTVLAAIDAAIEDGVDVLSMSLAFQYDNLYDLLLHWVHLEPFKMASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59190			subtilase family protein (.1)		Lus10000018 [exp]	0	1
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10012134 [exp]	5.7	0.6975
					Lus10019796 [exp]	6.3	0.7719
AT5G48740			Leucine-rich repeat protein ki...		Lus10038174 [exp]	7.3	0.8407
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10004657 [exp]	9.0	0.7848
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	11.2	0.7327
AT5G48740			Leucine-rich repeat protein ki...		Lus10038172 [exp]	17.3	0.7905
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	23.2	0.7270
AT1G76140			Prolyl oligopeptidase family p...		Lus10034556 [exp]	24.0	0.7187
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10039195 [exp]	24.5	0.7506
					Lus10005902 [exp]	26.9	0.7121

Compare expression of checked genes

Lus10000018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.