Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02750 93 / 4e-22 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G52850 92 / 8e-22 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G56550 91 / 3e-21 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G64310 90 / 6e-21 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G35130 88 / 2e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 88 / 3e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09950 86 / 9e-20 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 86 / 1e-19 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 86 / 2e-19 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14850 84 / 4e-19 MEF11, LOI1 lovastatin insensitive 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027366 [exp] 277 / 9e-90 AT2G40720 328 / 7e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022974 [exp] 96 / 4e-23 AT2G03880 542 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013540 [exp] 95 / 1e-22 AT4G02750 1075 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001617 [exp] 94 / 2e-22 AT2G03880 840 / 0.0 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017032 [exp] 87 / 4e-20 AT4G32430 844 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021355 [exp] 87 / 9e-20 AT4G32430 835 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009913 [exp] 87 / 1e-19 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026460 [exp] 87 / 1e-19 AT1G15510 1030 / 0.0 VANILLA CREAM 1, ARABIDOPSIS EARLY CHLOROPLAST BIOGENESIS2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015256 [exp] 85 / 4e-19 AT5G46460 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G258500 [exp] 163 / 1e-46 AT2G40720 481 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G053566 [exp] 103 / 2e-28 AT2G34400 80 / 2e-18 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G074000 [exp] 99 / 3e-24 AT4G39952 892 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.008G052200 [exp] 95 / 1e-22 AT2G39620 816 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G051300 [exp] 94 / 2e-22 AT3G13770 908 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 93 / 5e-22 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G043400 [exp] 92 / 1e-21 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G178200 [exp] 91 / 3e-21 AT4G35130 919 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G088600 [exp] 91 / 3e-21 AT1G31430 690 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G052300 [exp] 89 / 9e-21 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000020 pacid=23165464 polypeptide=Lus10000020 locus=Lus10000020.g ID=Lus10000020.BGIv1.0 annot-version=v1.0 ATGTACAGTGAGCTCAGAAGTCTGAATTCAGCTTATAAGATATTCAACACTACGAGAATCCAGGATGCTGCATTGTGGAACTCCATGATAGCTGCGTTTA TAGAACACGGTTATCATAAAGAAGCTACTCATCTCTTCATCAGAAAAACAACAGAAGAAGTAACAACAGATTCGACGACATTCGTCATTATGCTTTCCTC CATTGGAGAGGCTGTAAATGGGTTGGAATTGGGTAGAATGATACATGCTCATGCATTGAAGCTAGGAATTGAAACCGATGTCTCTGTAGGGAACGCCTTG TTAAGCATGTACGCAGATCGAAACTGCATCGAAGCTGCAAAGGTCTTCTCAGGGATGAAAGAGACTGATGTTGTGTCGTATAACACCATGATTATGGCTA TAGAGAATGAAGAAGCTTGGGAGTTCTTTGTAGAAATGCAACAATCCGAACTCATGCCAAACGCTTACACAATGGTGTCTCTCCTCGCTTCCTGTAGAGA TGAACAGATCTCAACATTGGCCGCTCGATCCATGGTGTTGTTGTTAAACAAGGTTTCGATGCCAACTCAGCATTGA
AA sequence Show only first row Show all	>Lus10000020 pacid=23165464 polypeptide=Lus10000020 locus=Lus10000020.g ID=Lus10000020.BGIv1.0 annot-version=v1.0 MYSELRSLNSAYKIFNTTRIQDAALWNSMIAAFIEHGYHKEATHLFIRKTTEEVTTDSTTFVIMLSSIGEAVNGLELGRMIHAHALKLGIETDVSVGNAL LSMYADRNCIEAAKVFSGMKETDVVSYNTMIMAIENEEAWEFFVEMQQSELMPNAYTMVSLLASCRDEQISTLAARSMVLLLNKVSMPTQH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56550			Pentatricopeptide repeat (PPR)...		Lus10000020 [exp]	0	1
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	2.4	0.8192
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10034952 [exp]	3.7	0.8360
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	5.7	0.7986
AT1G31830			Amino acid permease family pro...		Lus10003232 [exp]	6.3	0.7818
AT5G51010			Rubredoxin-like superfamily pr...		Lus10027889 [exp]	8.5	0.7843
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Lus10006596 [exp]	10.0	0.7909
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10027365 [exp]	10.5	0.7866
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Lus10016509 [exp]	14.2	0.7828
AT3G07190			B-cell receptor-associated pro...		Lus10025914 [exp]	15.7	0.7668
AT3G25970			Pentatricopeptide repeat (PPR)...		Lus10030249 [exp]	15.8	0.7802

Compare expression of checked genes

Lus10000020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.