Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39720 145 / 1e-41 RHC2A RING-H2 finger C2A (.1) AT5G59550 145 / 1e-41 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G46620 143 / 6e-41 zinc finger (C3HC4-type RING finger) family protein (.1) AT3G56580 92 / 3e-22 RING/U-box superfamily protein (.1.2.3) AT2G40830 91 / 1e-21 RHC1A RING-H2 finger C1A (.1.2.3) AT3G10815 86 / 8e-21 RING/U-box superfamily protein (.1) AT3G19950 81 / 3e-18 RING/U-box superfamily protein (.1) AT1G60360 80 / 8e-18 RING/U-box superfamily protein (.1) AT5G01980 80 / 2e-17 RING/U-box superfamily protein (.1) AT3G60080 74 / 6e-16 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024372 [exp] 268 / 3e-90 AT5G59550 197 / 5e-60 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10004712 [exp] 181 / 1e-55 AT5G59550 294 / 6e-97 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040783 [exp] 131 / 1e-37 AT5G59550 228 / 1e-72 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040278 [exp] 112 / 1e-30 AT5G59550 224 / 2e-71 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10001582 [exp] 94 / 9e-24 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10003698 [exp] 96 / 1e-23 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3) Lus10013235 [exp] 93 / 1e-22 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 93 / 1e-22 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 86 / 2e-20 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G087800 [exp] 192 / 9e-61 AT5G59550 258 / 1e-83 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.010G201300 [exp] 165 / 2e-49 AT2G39720 240 / 2e-75 RING-H2 finger C2A (.1) Potri.008G058100 [exp] 162 / 3e-48 AT5G59550 225 / 8e-70 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G243300 [exp] 124 / 4e-34 AT3G46620 239 / 8e-76 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G034800 [exp] 121 / 4e-33 AT3G46620 236 / 8e-75 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.016G029300 [exp] 96 / 6e-24 AT2G40830 317 / 9e-108 RING-H2 finger C1A (.1.2.3) Potri.006G032100 [exp] 96 / 1e-23 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3) Potri.002G085800 [exp] 92 / 7e-22 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.012G126700 [exp] 89 / 4e-21 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1) Potri.012G036700 [exp] 89 / 8e-21 AT3G19950 273 / 5e-90 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06547 [flax] [poplar] DUF1117 Protein of unknown function (DUF1117) CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10000023 pacid=23166270 polypeptide=Lus10000023 locus=Lus10000023.g ID=Lus10000023.BGIv1.0 annot-version=v1.0 ATGCCTATAATCAAGATCGTGTCAAGCCATATCTCGATGGAGTCCCACTGCGCGGTATGTAAAGAACCCTTCCAGCTGGATTCGGAAGCGAGAGAGATGC CTTGTAAGCACATTTACCATTCCGATTGCATCCTCCCTTGGCTTTCCCTCAGAAACTCCTGCCCTATTTGCCGCCACGAGCTCGCGACAGAAATCCCCAG GGATCGATCGTCGTCATCGCCTAGGTCCGATGACGAGACGGTCGGGCTCACCATATGGAGACTCCCCGGCGGCGGATTTGCCGTCGGGAGGTTCAGCGAC GGAACCAGAGCTTCTGATTTTCCCGTAGTTTTCACCGAGGTTGACGGCGGATTCAACGCCGCTCCAGGCGTTCCGAGGAGGATTTCATGGGCGCCTATTA GCAGGAGATCGAGAGAAAGCAGCGGCTTCCGTCGTGCTGTCAGAGGTTTCATCTCAATTTTCCGGCGGATTGGAAGAGGCTCCTCTTCTGGTAATCGCAA CTCTAATTTAATAAGAAGTAGGTCAAATTTAGGCTCAGACAGGGCGTTGACCATGAGACGCCGCATTGGTGAGACTCGGGCTTTGGATGATCGTAGATGG TGA
AA sequence Show only first row Show all	>Lus10000023 pacid=23166270 polypeptide=Lus10000023 locus=Lus10000023.g ID=Lus10000023.BGIv1.0 annot-version=v1.0 MPIIKIVSSHISMESHCAVCKEPFQLDSEAREMPCKHIYHSDCILPWLSLRNSCPICRHELATEIPRDRSSSSPRSDDETVGLTIWRLPGGGFAVGRFSD GTRASDFPVVFTEVDGGFNAAPGVPRRISWAPISRRSRESSGFRRAVRGFISIFRRIGRGSSSGNRNSNLIRSRSNLGSDRALTMRRRIGETRALDDRRW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10000023 [exp]	0	1
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10043369 [exp]	4.2	0.8671
AT1G49780		PUB26	plant U-box 26 (.1)		Lus10014073 [exp]	5.0	0.8386
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10015496 [exp]	7.7	0.8637
AT5G35090			unknown protein		Lus10001931 [exp]	9.2	0.8379
AT1G16840			unknown protein		Lus10033369 [exp]	10.1	0.7921
AT4G38660			Pathogenesis-related thaumatin...		Lus10041899 [exp]	11.0	0.8306
AT1G49470			Family of unknown function (DU...		Lus10023842 [exp]	11.5	0.8348
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	13.9	0.8555
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10007954 [exp]	21.8	0.8298
AT5G56760		SAT-52, AtSerat...	SERINE ACETYLTRANSFERASE 52, s...		Lus10032686 [exp]	23.0	0.8318

Compare expression of checked genes

Lus10000023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.