Plant FIBer expression Database

Lus10000025 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G06950 166 / 2e-51 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4)
AT3G12250 157 / 1e-48 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5)
AT5G06960 150 / 9e-46 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2)
AT1G68640 144 / 5e-42 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1)
AT5G06839 122 / 5e-34 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
AT1G08320 119 / 2e-33 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
AT5G10030 115 / 1e-31 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2)
AT1G77920 114 / 2e-31 bZIP bZIP transcription factor family protein (.1)
AT1G22070 111 / 5e-30 bZIP TGA3 TGA1A-related gene 3 (.1)
AT5G65210 102 / 2e-27 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008658
[exp]
197 / 9e-64 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Lus10026166
[exp]
196 / 2e-63 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Lus10024140
[exp]
186 / 3e-59 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Lus10023822
[exp]
144 / 1e-41 AT5G06839 491 / 2e-171 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Lus10041475
[exp]
131 / 6e-37 AT1G68640 444 / 4e-153 PERIANTHIA, bZIP transcription factor family protein (.1)
Lus10020610
[exp]
129 / 8e-36 AT1G08320 633 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Lus10004876
[exp]
126 / 5e-35 AT1G08320 635 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Lus10043387
[exp]
116 / 1e-31 AT1G08320 481 / 7e-168 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Lus10019543
[exp]
114 / 1e-30 AT1G08320 508 / 5e-178 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G194600
[exp]
190 / 3e-59 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5)
Potri.006G039000
[exp]
186 / 6e-58 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4)
Potri.001G029800
[exp]
185 / 1e-57 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5)
Potri.016G036500
[exp]
182 / 9e-57 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4)
Potri.008G118300
[exp]
155 / 3e-46 AT1G68640 456 / 8e-159 PERIANTHIA, bZIP transcription factor family protein (.1)
Potri.006G058800
[exp]
142 / 7e-41 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Potri.016G049200
[exp]
138 / 1e-39 AT5G06839 551 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3)
Potri.004G203400
[exp]
127 / 2e-35 AT1G08320 571 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Potri.009G164300
[exp]
125 / 5e-35 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
Potri.005G170500
[exp]
119 / 2e-33 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1)
PFAM info
Representative CDS sequence
>Lus10000025 pacid=23162607 polypeptide=Lus10000025 locus=Lus10000025.g ID=Lus10000025.BGIv1.0 annot-version=v1.0
ATGAATCAGTTGGAGCCTTTGACGGAGCAGCAGCTGGCAGGCATTACCAACCTGCAGCAATCATCCCAACAGGCAGAAGATGCACTGTCTCAAGGAATGG
AGGCCTTGCAGCAGTCGTTGGCCGAAACATTGTCCAGTGGTTCCCCGGGATCCACGGGCTCATCTGGAAATGTGGCGAACTATATGGGTCAGATGGCCAT
GGCGATGGGAAAGCTTGGCACCCTCGAGGGGTTTATTCGCCAGGCTGACAACTTGCGACAACAGACGCTACAACAGATGCACAGAATATTAACTACCCGG
CAGTCGGCCAGAGCGTTGCTGGCGATCCATGATTACTTCTCGCGATTGCGAGCTCTTAGTTCGCTTTGGCTCGCCAGACCAAGAGAGTGA
AA sequence
>Lus10000025 pacid=23162607 polypeptide=Lus10000025 locus=Lus10000025.g ID=Lus10000025.BGIv1.0 annot-version=v1.0
MNQLEPLTEQQLAGITNLQQSSQQAEDALSQGMEALQQSLAETLSSGSPGSTGSSGNVANYMGQMAMAMGKLGTLEGFIRQADNLRQQTLQQMHRILTTR
QSARALLAIHDYFSRLRALSSLWLARPRE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G06950 bZIP TGA2, AHBP-1B bZIP transcription factor fami... Lus10000025
[exp]
0 1
AT3G07180 GPI transamidase component PIG... Lus10025916
[exp]
27.5 0.7162

Lus10000025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.