Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20140 243 / 7e-80 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT4G29040 243 / 8e-80 RPT2A regulatory particle AAA-ATPase 2A (.1) AT5G58290 57 / 4e-10 RPT3 regulatory particle triple-A ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006976 [exp] 257 / 2e-85 AT4G29040 828 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10019995 [exp] 257 / 4e-81 AT2G20140 827 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10022834 [exp] 247 / 6e-81 AT2G20140 735 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10011901 [exp] 247 / 5e-80 AT2G20140 844 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10001313 [exp] 185 / 5e-58 AT4G29040 673 / 0.0 regulatory particle AAA-ATPase 2A (.1) Lus10015523 [exp] 138 / 8e-43 AT4G29040 134 / 1e-38 regulatory particle AAA-ATPase 2A (.1) Lus10015524 [exp] 108 / 9e-29 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G252600 [exp] 246 / 3e-81 AT4G29040 838 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.014G194700 [exp] 244 / 2e-80 AT4G29040 829 / 0.0 regulatory particle AAA-ATPase 2A (.1) Potri.006G029100 [exp] 58 / 8e-11 AT5G58290 308 / 2e-105 regulatory particle triple-A ATPase 3 (.1) Potri.016G028000 [exp] 58 / 2e-10 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G031000 [exp] 57 / 5e-10 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.006G028200 [exp] 45 / 2e-06 AT5G58290 193 / 2e-60 regulatory particle triple-A ATPase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000030 pacid=23162274 polypeptide=Lus10000030 locus=Lus10000030.g ID=Lus10000030.BGIv1.0 annot-version=v1.0 ATGGGCCGGCCTCCGGGAGACAGGAAAGGCGACGGAGACAACAAGAAGGAGAAGAAGTACGAGCCAGCCGCGCCGCCTTCCCGCGTCGGACGGAAGCAGC GGAAGCAGAAGGGCTCCGAGACGGCGGCGAGGCTTCCGACGGTGACGCCTTTGACGAAGTGCAAGCTCCGCCTTCTGAAGATGGAACGGATCAAGGATTA CTTGTTGATGGAGGAAGAGTTCGTCGCCAATCAGGAGAGGCTGAAGCCTCAGGAGGAGAAGAACGAGGAGGATCGTTCTAAGGTCGACGATCTCAGGGGA TCTCCGATGAGCGTCGGGAATCTGGAGGAGCTGATTGACGAGAACCACGCTATTGTTTCTTCCTCGGTTGGTCCGGAGTATTATGTTGGGATTTTGTCGT TCGTTGATAAGGATCAGATTGAGCCTGGCTGCGCAATTTTGATGCACAATAAGGTAATCTATTAG
AA sequence Show only first row Show all	>Lus10000030 pacid=23162274 polypeptide=Lus10000030 locus=Lus10000030.g ID=Lus10000030.BGIv1.0 annot-version=v1.0 MGRPPGDRKGDGDNKKEKKYEPAAPPSRVGRKQRKQKGSETAARLPTVTPLTKCKLRLLKMERIKDYLLMEEEFVANQERLKPQEEKNEEDRSKVDDLRG SPMSVGNLEELIDENHAIVSSSVGPEYYVGILSFVDKDQIEPGCAILMHNKVIY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29040		RPT2A	regulatory particle AAA-ATPase...		Lus10000030 [exp]	0	1
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	6.7	0.8507
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10042326 [exp]	7.2	0.8703
AT5G57460			unknown protein		Lus10004736 [exp]	8.9	0.8508
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004973 [exp]	8.9	0.8315
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Lus10031398 [exp]	9.2	0.8446
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011188 [exp]	10.8	0.8472
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	11.0	0.8413
AT1G05520			Sec23/Sec24 protein transport ...		Lus10041256 [exp]	14.4	0.8417
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	16.3	0.8446
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Lus10041124 [exp]	19.4	0.8092

Compare expression of checked genes

Lus10000030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.