Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45140 96 / 1e-25 PVA12 plant VAP homolog 12 (.1) AT3G60600 91 / 8e-24 (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, (AT)VAP, VAP27-1, VAP27, (AT)VAP, (AT)VAP, (A VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) AT4G00170 82 / 3e-20 Plant VAMP (vesicle-associated membrane protein) family protein (.1) AT2G23830 76 / 1e-18 PapD-like superfamily protein (.1) AT1G51270 73 / 2e-16 structural molecules;transmembrane receptors;structural molecules (.1.2.3.4) AT5G47180 65 / 7e-14 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) AT1G08820 63 / 9e-13 VAP27-2 vamp/synaptobrevin-associated protein 27-2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008512 [exp] 164 / 7e-52 AT2G45140 296 / 7e-102 plant VAP homolog 12 (.1) Lus10007463 [exp] 152 / 4e-47 AT3G60600 306 / 4e-105 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10028937 [exp] 155 / 4e-46 AT3G60600 305 / 2e-101 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10000031 [exp] 132 / 1e-41 AT3G60600 143 / 3e-44 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Lus10010360 [exp] 92 / 5e-24 AT4G00170 311 / 5e-108 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10015885 [exp] 90 / 5e-23 AT2G45140 307 / 2e-106 plant VAP homolog 12 (.1) Lus10036495 [exp] 85 / 2e-21 AT4G00170 316 / 4e-110 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Lus10009279 [exp] 87 / 4e-21 AT4G00060 1034 / 0.0 maternal effect embryo arrest 44, Nucleotidyltransferase family protein (.1) Lus10033837 [exp] 70 / 3e-15 AT1G08820 256 / 2e-80 vamp/synaptobrevin-associated protein 27-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G152000 [exp] 115 / 2e-33 AT2G45140 296 / 6e-102 plant VAP homolog 12 (.1) Potri.003G076100 [exp] 110 / 4e-31 AT2G45140 262 / 1e-88 plant VAP homolog 12 (.1) Potri.014G060900 [exp] 104 / 7e-29 AT2G45140 328 / 9e-115 plant VAP homolog 12 (.1) Potri.002G144000 [exp] 100 / 2e-27 AT3G60600 298 / 1e-102 VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1, vesicle associated protein (.1.2.3) Potri.002G144800 [exp] 87 / 4e-22 AT4G00170 313 / 5e-109 Plant VAMP (vesicle-associated membrane protein) family protein (.1) Potri.005G044900 [exp] 67 / 3e-14 AT1G08820 261 / 4e-84 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.013G031400 [exp] 67 / 5e-14 AT1G08820 273 / 5e-89 vamp/synaptobrevin-associated protein 27-2 (.1.2) Potri.001G152100 [exp] 63 / 5e-13 AT5G47180 229 / 4e-76 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.003G082500 [exp] 58 / 3e-11 AT5G47180 281 / 1e-96 Plant VAMP (vesicle-associated membrane protein) family protein (.1), Plant VAMP (vesicle-associated membrane protein) family protein (.2) Potri.010G031601 [exp] 47 / 4e-07 AT2G45140 112 / 4e-29 plant VAP homolog 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000032 pacid=23161502 polypeptide=Lus10000032 locus=Lus10000032.g ID=Lus10000032.BGIv1.0 annot-version=v1.0 ATGCAAGCGCAGAAGGAAGCTCCTCCGGATATGCAATGCAAGGACAAATTCTTGCTTCAGAGCGTAAAAGCTCCCGAGGGTTCGACTGTAAAGGATATCA CTGCTGAGATGTTCAATAAGGAGGCTGGACATATGGTTGAGGAAACCAAGTTGAAGGTTGTCTATGTTGCCCCACCTCAACCTCCTTCTCCTGTTCCTGA AGGTTCAGAGGAAGGATCATCTCCTCGTGGTTCTGTCTCGGACAATGGACATGTAAACGGTGCTGAGTTTGCAGCTGCCTCGAAAGCATTTGTCCAGCAG TTTGATAATGACGATAAATCTCCTGAGGTAAAAGTTTAG
AA sequence Show only first row Show all	>Lus10000032 pacid=23161502 polypeptide=Lus10000032 locus=Lus10000032.g ID=Lus10000032.BGIv1.0 annot-version=v1.0 MQAQKEAPPDMQCKDKFLLQSVKAPEGSTVKDITAEMFNKEAGHMVEETKLKVVYVAPPQPPSPVPEGSEEGSSPRGSVSDNGHVNGAEFAAASKAFVQQ FDNDDKSPEVKV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10000032 [exp]	0	1
AT5G20120			unknown protein		Lus10019426 [exp]	2.4	0.8637
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	3.5	0.8558
AT5G07370		ATIPK2A, IPK2a	inositol polyphosphate kinase ...		Lus10009397 [exp]	3.5	0.8482
AT2G26870		NPC2	non-specific phospholipase C2 ...		Lus10009690 [exp]	5.7	0.8559
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	10.7	0.8511
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10007584 [exp]	15.1	0.8703
AT5G20120			unknown protein		Lus10043283 [exp]	16.9	0.8106
AT4G18490			unknown protein		Lus10021779 [exp]	21.6	0.8288
AT3G14470			NB-ARC domain-containing disea...		Lus10003571 [exp]	22.6	0.8424
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10041881 [exp]	24.6	0.8393

Compare expression of checked genes

Lus10000032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.