Plant FIBer expression Database

Lus10000033 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47830 152 / 3e-44 Cation efflux family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040922
[exp]
259 / 5e-85 AT2G47830 545 / 0.0 Cation efflux family protein (.1.2)
Lus10009817
[exp]
189 / 2e-61 AT2G47830 190 / 2e-58 Cation efflux family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G209023
[exp]
148 / 2e-42 AT2G47830 495 / 1e-172 Cation efflux family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01545 Cation_efflux Cation efflux family
Representative CDS sequence
>Lus10000033 pacid=23143166 polypeptide=Lus10000033 locus=Lus10000033.g ID=Lus10000033.BGIv1.0 annot-version=v1.0
ATGGGATTCAGATTCCGCAGTTTCAATCCCGTCTTCAGATCATGCCTCCATCGAGAAGTTCTGCGCCCTTCTTCAGCTTCTCTTTCTCTTCTTCCTTCCT
CAGCTCCCCTTGTCCCTCACCTTCCTCATCCCAAGATCCCCATCCGCTGGCATTTCGGCCACTCCCATTCCGACCCCGAACACCACCACCTCAATACTTC
CGACGCTGGCGAGGAGGGTGAAAAGATCTTCCGTCTCGGCTTTGCCGCAGATATTGGGTTATCCATCGGGAAGGCCTTCACTGGATATTTGACTGGGAGT
ACTGCTATTATTGCCGATGCCGCTCATTCTATCTCGGACGTGGTTCTTAGTGGAGTTGCCTTGTGGTCATTCAAAGCTGGGATGACTCCTAAAGATAGAG
AACATCCTTATGGACACGGTAAATTTGAAAGTCTTGGCGCTCTAGGAATTTCTTCCATGCTTCTAGTTACTGCTGGTGGCATTGCCTGGCATGCCGTTGA
TGTTCTTATTGTACGGTTTCTTCCATCTTCTCCCAGTACCATCTATTCAAGTCACAGTAGTTGA
AA sequence
>Lus10000033 pacid=23143166 polypeptide=Lus10000033 locus=Lus10000033.g ID=Lus10000033.BGIv1.0 annot-version=v1.0
MGFRFRSFNPVFRSCLHREVLRPSSASLSLLPSSAPLVPHLPHPKIPIRWHFGHSHSDPEHHHLNTSDAGEEGEKIFRLGFAADIGLSIGKAFTGYLTGS
TAIIADAAHSISDVVLSGVALWSFKAGMTPKDREHPYGHGKFESLGALGISSMLLVTAGGIAWHAVDVLIVRFLPSSPSTIYSSHSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G47830 Cation efflux family protein (... Lus10000033
[exp]
0 1
AT2G48060 unknown protein Lus10029972
[exp]
1.4 0.8389
AT5G66050 Wound-responsive family protei... Lus10041852
[exp]
2.4 0.8101
AT2G34400 Pentatricopeptide repeat (PPR-... Lus10010320
[exp]
4.2 0.7942
AT3G12490 ATCYS6, ATCYSB ARABIDOPSIS THALIANA PHYTOCYST... Lus10008702
[exp]
6.2 0.8148
AT2G21090 Pentatricopeptide repeat (PPR-... Lus10019213
[exp]
8.5 0.8011
AT1G54130 AT-RSH3, RSH3, ... RELA/SPOT homolog 3 (.1) Lus10008755
[exp]
12.8 0.7704
AT3G10530 Transducin/WD40 repeat-like su... Lus10024656
[exp]
13.7 0.7786
AT2G45880 BZR BAM7, BMY4 BETA-AMYLASE 4, beta-amylase 7... Lus10017819
[exp]
16.5 0.7645
AT4G18490 unknown protein Lus10021779
[exp]
17.2 0.8009
AT4G18490 unknown protein Lus10034597
[exp]
17.2 0.7835

Lus10000033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.