Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18940 281 / 5e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G02860 171 / 3e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 115 / 1e-29 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 115 / 1e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 114 / 3e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 112 / 2e-28 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 110 / 9e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 108 / 2e-27 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63230 106 / 2e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G06000 108 / 4e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000036 [exp] 446 / 6e-162 AT2G18940 279 / 4e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 461 / 5e-159 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015530 [exp] 451 / 4e-155 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006962 [exp] 312 / 9e-102 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025473 [exp] 310 / 5e-101 AT2G18940 970 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002107 [exp] 164 / 2e-46 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 163 / 3e-46 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10028943 [exp] 114 / 6e-31 AT5G01110 299 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021074 [exp] 112 / 5e-29 AT1G62930 273 / 5e-86 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G166200 [exp] 294 / 8e-95 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G092100 [exp] 176 / 5e-51 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G297300 [exp] 174 / 2e-50 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 122 / 4e-32 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050400 [exp] 118 / 1e-30 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 118 / 2e-30 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 117 / 2e-30 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G046000 [exp] 115 / 1e-29 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 114 / 2e-29 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G047000 [exp] 114 / 3e-29 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000035 pacid=23146548 polypeptide=Lus10000035 locus=Lus10000035.g ID=Lus10000035.BGIv1.0 annot-version=v1.0 ATGGAAAGGGCATTCGAGGTACTAAAGAAGCACGGGTACAAAATCGACCTGGTTCTTTACAACGCAATGTTATCAATGTTCGCCAAGAATAACTTAACCG ACAGGGCCCACGAGATGCTAAGGACTATCCGCAAGAGCGGGTTGCATCCTGACCTTGTCAGCTATAACAACTTGATGGACATGTACGCTCGAGGTGGAGA TTGCTGGAAGGCAGAAGAGATCCTGAAAGGGCTACAAGATTCCGGTGGGAAACCAGATGTGGTATCGTACAACACAGTGATCAAAGGGTTCTGTAGAAAA GGGCTTATGCAAGAAGCGTTTCGAGTTCTGTCGGAGATGACCTCACGGGGTATCAGGCCTTGCATTTTCACGTACAACACGTTTGTAACAGGGTATGTCG GAGAAGGGAGGGTCGGGGAGATAATAGATGTTGTGAGGTATATGGTTGAGCACGGTTGCAGGCCGGAGATGCTGACGTACAAGATTGCAGTGGATGGTTA CTGCAAGGCGAGGAAATATAAAGAGGCGCTGGAGTTCATATCGCAGATTAAGAGTATAGACAAGTGGTTCGATTTGGAGACTGAGCAAAGACTGGCTACT CATGTTCGGGATATGTCCAAGTCTACAAGTCATCATGATTGTTTGACCAGGTAA
AA sequence Show only first row Show all	>Lus10000035 pacid=23146548 polypeptide=Lus10000035 locus=Lus10000035.g ID=Lus10000035.BGIv1.0 annot-version=v1.0 MERAFEVLKKHGYKIDLVLYNAMLSMFAKNNLTDRAHEMLRTIRKSGLHPDLVSYNNLMDMYARGGDCWKAEEILKGLQDSGGKPDVVSYNTVIKGFCRK GLMQEAFRVLSEMTSRGIRPCIFTYNTFVTGYVGEGRVGEIIDVVRYMVEHGCRPEMLTYKIAVDGYCKARKYKEALEFISQIKSIDKWFDLETEQRLAT HVRDMSKSTSHHDCLTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000035 [exp]	0	1
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	1.0	0.9716
AT5G48370			Thioesterase/thiol ester dehyd...		Lus10008740 [exp]	2.8	0.9083
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10014694 [exp]	4.5	0.9266
AT2G30570		PSBW	photosystem II reaction center...		Lus10014751 [exp]	5.1	0.9355
AT3G09650		CRM3, HCF152	HIGH CHLOROPHYLL FLUORESCENCE ...		Lus10023168 [exp]	5.3	0.9088
AT4G25910		ATCNFU3, NFU3	NFU domain protein 3 (.1)		Lus10001634 [exp]	6.0	0.9306
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10015530 [exp]	7.7	0.8992
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	10.0	0.9142
AT2G38270		ATGRX2, CXIP2	GLUTAREDOXIN, CAX-interacting ...		Lus10002847 [exp]	10.0	0.9046
AT5G48300		APS1, ADG1	ADP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10025187 [exp]	12.4	0.8698

Compare expression of checked genes

Lus10000035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.