Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17880 256 / 3e-82 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 249 / 2e-79 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 236 / 3e-74 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46830 169 / 8e-50 bHLH ATNIG1, bHLH028 NACL-inducible gene 1 (.1) AT1G01260 129 / 1e-34 bHLH bHLH013, INU4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT2G46510 122 / 3e-32 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G16430 119 / 2e-31 bHLH bHLH003, INU3 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00870 117 / 6e-31 bHLH bHLH014 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G57150 85 / 6e-20 bHLH bHLH035 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G37850 84 / 7e-19 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030970 [exp] 385 / 7e-132 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 282 / 6e-92 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 277 / 2e-91 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 276 / 3e-89 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10035365 [exp] 174 / 2e-56 AT5G46760 129 / 7e-37 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10005999 [exp] 155 / 1e-44 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030243 [exp] 135 / 8e-37 AT1G01260 505 / 2e-173 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10005966 [exp] 125 / 5e-33 AT1G01260 525 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10024871 [exp] 109 / 9e-28 AT4G16430 448 / 5e-155 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G142200 [exp] 267 / 3e-86 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.003G092200 [exp] 267 / 8e-86 AT1G32640 559 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.002G176900 [exp] 167 / 2e-49 AT4G17880 277 / 2e-86 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.014G103700 [exp] 161 / 6e-47 AT4G00870 252 / 1e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 152 / 1e-43 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 146 / 1e-41 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G172101 [exp] 142 / 4e-39 AT1G01260 526 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G099700 [exp] 138 / 7e-38 AT1G01260 556 / 0.0 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.005G221100 [exp] 118 / 7e-31 AT4G16430 488 / 6e-170 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G042000 [exp] 116 / 5e-30 AT4G16430 475 / 4e-165 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10000037 pacid=23175829 polypeptide=Lus10000037 locus=Lus10000037.g ID=Lus10000037.BGIv1.0 annot-version=v1.0 ATGGTGGATTCAGACGTTGACCAATCTGATCTTGAACCTTCGGTGATTAAGGAAGTGGTGGTTGCAGAGCCCGAAAAGCGGCCTCGAAAGAGAGGGAGGA AGCCAGCTAACGGCAGAGAAGAGCCGTTAAACCATGTTGAAGCAGAGAGGCAGAGGAGGGAAAAGCTAAACCAGAGATTCTACGCTTTAAGAGCAGTGGT CCCCAACGTGTCGAAGATGGACAAAGCGTCCCTACTCGGGGACGCCATCTCCTACATCAAGGAGCTCAGTTCGAAGCTCCAATTGACCGAGTCGTCAAAA AAGGAGCTCGAGAGGCAAGTTGAGTCTATCAGGAAACAGCAGCCTGATTATCATCAGGAATACAACAAGAAGGCGTGTAGCAACGAATTTGGGGGTAAGA CGAAAGCGATCGAGATGGATATAGACGTGAAGATAATTGGGTGGGATGCGATGATTAGAATACAATGCAGCAAGGAGAACCATCCAGCAGCTAGACTGAT GGCAGGGTTGAAAGAGCTGGACTTGGATGTACACCATGCTAGTGTTTCAGTGGTGAATGATTTGATGATACAGCAAGCTACTGTGAAAATGGGTAGTCGA TTCTACACGCAGGAGGAGCTGAGGTTAGCATTGTCCAACAAAGTTGGTGGTGACACCAGATAG
AA sequence Show only first row Show all	>Lus10000037 pacid=23175829 polypeptide=Lus10000037 locus=Lus10000037.g ID=Lus10000037.BGIv1.0 annot-version=v1.0 MVDSDVDQSDLEPSVIKEVVVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYIKELSSKLQLTESSK KELERQVESIRKQQPDYHQEYNKKACSNEFGGKTKAIEMDIDVKIIGWDAMIRIQCSKENHPAARLMAGLKELDLDVHHASVSVVNDLMIQQATVKMGSR FYTQEELRLALSNKVGGDTR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17880	bHLH	bHLH004, MYC4	Basic helix-loop-helix (bHLH) ...		Lus10000037 [exp]	0	1
AT5G46760	bHLH	bHLH005, ATR2, ...	Basic helix-loop-helix (bHLH) ...		Lus10035365 [exp]	1.0	0.9566
AT5G67080		MAPKKK19	mitogen-activated protein kina...		Lus10009364 [exp]	1.7	0.8838
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10035366 [exp]	2.0	0.9254
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	2.8	0.8826
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10008129 [exp]	6.7	0.8797
AT1G74950	ZIM	TIFY10B, JAZ2	JASMONATE-ZIM-DOMAIN PROTEIN 2...		Lus10013166 [exp]	7.3	0.8655
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Lus10038506 [exp]	12.3	0.8684
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Lus10022497 [exp]	13.0	0.8588
AT2G41010		ATCAMBP25	calmodulin (CAM)-binding prote...		Lus10016205 [exp]	13.3	0.8617
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10041660 [exp]	14.9	0.8786

Compare expression of checked genes

Lus10000037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.