Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16380 63 / 2e-12 Heavy metal transport/detoxification superfamily protein (.1.2) AT1G49420 60 / 1e-11 Heavy metal transport/detoxification superfamily protein (.1) AT1G51090 52 / 1e-08 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001913 [exp] 98 / 2e-25 AT4G16380 90 / 1e-21 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10039073 [exp] 76 / 2e-17 AT4G16380 103 / 2e-27 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10038786 [exp] 75 / 5e-17 AT1G49420 108 / 1e-28 Heavy metal transport/detoxification superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G019200 [exp] 63 / 2e-12 AT4G16380 86 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019300 [exp] 63 / 3e-12 AT4G16380 94 / 1e-22 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018400 [exp] 61 / 6e-12 AT4G16380 81 / 9e-19 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019100 [exp] 62 / 1e-11 AT4G16380 59 / 8e-10 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018901 [exp] 60 / 1e-11 AT4G16380 81 / 1e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G018500 [exp] 57 / 2e-10 AT4G16380 77 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019500 [exp] 56 / 3e-10 AT4G16380 78 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019400 [exp] 55 / 1e-09 AT4G16380 79 / 4e-18 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.016G006700 [exp] 54 / 2e-09 AT4G16380 45 / 2e-05 Heavy metal transport/detoxification superfamily protein (.1.2) Potri.006G019800 [exp] 53 / 7e-09 AT4G16380 82 / 6e-19 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000039 pacid=23149168 polypeptide=Lus10000039 locus=Lus10000039.g ID=Lus10000039.BGIv1.0 annot-version=v1.0 ATGGGAACACCAGAAATCCAGAATCAAGTGTTCGACGAGAAGGCGAATCGGGTGTTAATCACGGTACTCTGCTGCAGTCCGGAGAAGGTAATGGACAAGA TTTGCTGCAAAGGCAGGGAATCGATCAAGGGAATCGAGATCGTCAAACCTCCGCCATCGAAGCCCAAAGAGCCTGAAAAGCCCAAGGTGGTGCCAGTCCC AGAGAAACCCAAACTGCCCGATCCTGCTCCGAAGCCTCTTCCTGCCCCGGCACCTCAACCCGGTCCTCCGCCTCCAGGAGGGTTTCAGATTCAGTCCTGC TGCAGGAATTGCTACGGAGGGTGTGGGGTCGGCCCGTGTTACAGCATGCTACCGGCGCCACCGTGCTACGGAAGACCCGTCTACGACAGCTGGGGAGGTG GTGGAGGATACCACAGAGGAGGAGGCTATTACGTCACTGGAGGGGAGTGCTTTAGCGACGATAATCCATCGGGTTGCGTCGTCATGTGA
AA sequence Show only first row Show all	>Lus10000039 pacid=23149168 polypeptide=Lus10000039 locus=Lus10000039.g ID=Lus10000039.BGIv1.0 annot-version=v1.0 MGTPEIQNQVFDEKANRVLITVLCCSPEKVMDKICCKGRESIKGIEIVKPPPSKPKEPEKPKVVPVPEKPKLPDPAPKPLPAPAPQPGPPPPGGFQIQSC CRNCYGGCGVGPCYSMLPAPPCYGRPVYDSWGGGGGYHRGGGYYVTGGECFSDDNPSGCVVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16380			Heavy metal transport/detoxifi...		Lus10000039 [exp]	0	1
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	4.9	0.9241
AT1G53670		MSRB1, ATMSRB1	methionine sulfoxide reductase...		Lus10013727 [exp]	5.1	0.9201
AT2G37970		SOUL-1	SOUL heme-binding family prote...		Lus10017193 [exp]	7.5	0.9094
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	7.9	0.8970
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Lus10015994 [exp]	8.2	0.8699
AT5G49320			Protein of unknown function (D...		Lus10037723 [exp]	9.8	0.8864
AT5G03560			Tetratricopeptide repeat (TPR)...		Lus10012049 [exp]	9.9	0.8930
AT5G57345			unknown protein		Lus10001632 [exp]	10.1	0.9135
AT3G21750		UGT71B1	UDP-glucosyl transferase 71B1 ...		Lus10026795 [exp]	11.7	0.9048
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10036629 [exp]	12.6	0.8822

Compare expression of checked genes

Lus10000039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.