Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12140 148 / 9e-45 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G13020 148 / 5e-44 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 134 / 3e-38 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT5G06780 119 / 2e-33 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT5G20030 42 / 5e-05 Plant Tudor-like RNA-binding protein (.1) AT3G57970 40 / 0.0003 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021038 [exp] 218 / 5e-72 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10004188 [exp] 215 / 4e-70 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 150 / 2e-44 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 148 / 7e-44 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 120 / 4e-33 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 117 / 4e-32 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10018749 [exp] 47 / 7e-07 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 45 / 3e-06 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10014715 [exp] 42 / 4e-05 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G047600 [exp] 156 / 2e-47 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 151 / 2e-45 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 151 / 1e-44 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 149 / 4e-44 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 148 / 7e-44 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 145 / 2e-42 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 145 / 2e-42 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 49 / 2e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 45 / 3e-06 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 44 / 8e-06 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10000040 pacid=23139618 polypeptide=Lus10000040 locus=Lus10000040.g ID=Lus10000040.BGIv1.0 annot-version=v1.0 ATGATCGTTCTAATAAGGAGCAGTATATGTACGTTTGTTTTGCACATCCAAGAATTCATCTTAGCAATGGAGGCCCAGATTCATCTCTTGGAGCAAGAAG CTTATTGTGCTGTACTGCGTGCTTTCAAGGCTCAATCTGATGCTCTTACCTGGGAAAAGGAAGGTTTAATTACAGAACTCCGCAAAGAGCTCAGGGTATC GGATGATGAACACAGAGAGCTTCTCTCCAGGGTTAACGAGGATGACATCATCCGCCAGATTAGGGAATGGAGAACCACAGGTGTTCCTGAAGCTACAAGG TTCGGTGTGCCGCAGAGGGTTCATGAGATGATACCCAGCCCTACCATTTCGGCTGCTCGTAAGAAACAGAAGACATCTCAAGGGGTACGTCCATGGCTTT GA
AA sequence Show only first row Show all	>Lus10000040 pacid=23139618 polypeptide=Lus10000040 locus=Lus10000040.g ID=Lus10000040.BGIv1.0 annot-version=v1.0 MIVLIRSSICTFVLHIQEFILAMEAQIHLLEQEAYCAVLRAFKAQSDALTWEKEGLITELRKELRVSDDEHRELLSRVNEDDIIRQIREWRTTGVPEATR FGVPQRVHEMIPSPTISAARKKQKTSQGVRPWL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10000040 [exp]	0	1
AT1G32490		EMB2733, ESP3	ENHANCED SILENCING PHENOTYPE 3...		Lus10033690 [exp]	4.6	0.8777
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10015385 [exp]	6.9	0.8682
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	7.7	0.8542
AT5G46560			unknown protein		Lus10003015 [exp]	8.4	0.7665
AT4G01860			Transducin family protein / WD...		Lus10038045 [exp]	9.2	0.8671
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10003491 [exp]	10.0	0.8548
AT2G46200			unknown protein		Lus10000549 [exp]	10.4	0.8604
AT1G19290			Pentatricopeptide repeat (PPR)...		Lus10008185 [exp]	10.8	0.8312
AT4G23540			ARM repeat superfamily protein...		Lus10031065 [exp]	14.7	0.8431
AT4G33200		XI-15, ATXI-I, ...	MYOSIN XI-15, MYOSIN XI I, myo...		Lus10038072 [exp]	24.2	0.8290

Compare expression of checked genes

Lus10000040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.