Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71490 245 / 1e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49142 180 / 3e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 179 / 2e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 165 / 5e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G48910 167 / 8e-49 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G22830 168 / 9e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21300 169 / 1e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 167 / 2e-48 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G13650 168 / 3e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G22070 167 / 4e-48 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009487 [exp] 372 / 3e-125 AT1G71490 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003508 [exp] 351 / 2e-121 AT1G71490 415 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027008 [exp] 256 / 8e-83 AT1G71490 335 / 7e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 181 / 4e-53 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 178 / 1e-52 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 177 / 3e-51 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020588 [exp] 166 / 4e-51 AT2G27610 422 / 2e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 176 / 9e-51 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 175 / 9e-51 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G074700 [exp] 274 / 3e-88 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G027800 [exp] 187 / 3e-55 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 180 / 2e-52 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G048800 [exp] 176 / 3e-51 AT4G02750 1099 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G044700 [exp] 175 / 4e-51 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 176 / 5e-51 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G012500 [exp] 173 / 1e-50 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 172 / 2e-50 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G041200 [exp] 171 / 2e-49 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 171 / 3e-49 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000043 pacid=23162263 polypeptide=Lus10000043 locus=Lus10000043.g ID=Lus10000043.BGIv1.0 annot-version=v1.0 ATGGTTGAGGTTCTGTCAGCTTGTAGCCATTCCGGTCTAGTAAAAGAAGGGGAAATGCTGTTTCGAGAAATGTTTAGTGTTTACGACATCGTTCCTCGAT TAGAGCATTACGATTGCATGGTGGATCTCTTTGGGAGGGCAGGGATGTTAAATCAAGCGAAGGAGATCGTGTTAACTATGCCTTACAGTCCAACAGCTGA AATATGGGCTACTCTCTTAGGAGCTTGCCGGATTCACGGAAATACAGATATAGGGGAATGGGCAGCTAATCGTTTGCTAGAGATGAAACCGGAAAATTCG GGGTATTATGTGTTGATTGCCAACATGTATGCTGCTGCCGGAAGCTGGGATAAGCTGGCTAAAGTTCGAACCTTTATGAAGGATGTCGGTGTGAAGAAGT CTCCTGGATGTGCCTGGGTTGATGTGGGGTCCGGGTTTAGACGGTTTTTAGTAGGGGGTTGTTCTGAAGAACACGGGAATGAACTTTATCCTCTGTTGGA TGGGATGACGGAGCTGATGAAAGATGTTGGTCATGATGCTGCTGATGATGTTAGCTCGGAAGATGAAGCATTACAGACAGTGGGTTGA
AA sequence Show only first row Show all	>Lus10000043 pacid=23162263 polypeptide=Lus10000043 locus=Lus10000043.g ID=Lus10000043.BGIv1.0 annot-version=v1.0 MVEVLSACSHSGLVKEGEMLFREMFSVYDIVPRLEHYDCMVDLFGRAGMLNQAKEIVLTMPYSPTAEIWATLLGACRIHGNTDIGEWAANRLLEMKPENS GYYVLIANMYAAAGSWDKLAKVRTFMKDVGVKKSPGCAWVDVGSGFRRFLVGGCSEEHGNELYPLLDGMTELMKDVGHDAADDVSSEDEALQTVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71490			Tetratricopeptide repeat (TPR)...		Lus10000043 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10023016 [exp]	17.0	0.7889
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	27.4	0.7939
AT5G01720			RNI-like superfamily protein (...		Lus10001264 [exp]	58.0	0.7557
AT3G52860			unknown protein		Lus10003357 [exp]	62.2	0.7743
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	110.4	0.7502
AT4G00440			Protein of unknown function (D...		Lus10017797 [exp]	117.0	0.7438
AT1G01770			unknown protein		Lus10036349 [exp]	158.0	0.7172
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10034135 [exp]	158.2	0.7197
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10031022 [exp]	182.3	0.7242
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	197.0	0.7213

Compare expression of checked genes

Lus10000043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.