Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21610 214 / 1e-68 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G55590 146 / 3e-42 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G61680 144 / 9e-42 Pectin lyase-like superfamily protein (.1) AT5G07430 140 / 7e-40 Pectin lyase-like superfamily protein (.1) AT5G19730 139 / 2e-39 Pectin lyase-like superfamily protein (.1) AT5G07420 134 / 1e-37 Pectin lyase-like superfamily protein (.1) AT5G47500 134 / 2e-37 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT1G69940 130 / 3e-36 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07410 127 / 7e-35 Pectin lyase-like superfamily protein (.1) AT3G29090 123 / 6e-34 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023560 [exp] 396 / 3e-140 AT2G21610 368 / 4e-127 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10026347 [exp] 266 / 4e-89 AT2G21610 399 / 2e-139 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10042315 [exp] 243 / 7e-80 AT2G21610 383 / 5e-133 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10040446 [exp] 214 / 2e-69 AT2G21610 181 / 9e-55 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Lus10004720 [exp] 147 / 2e-42 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10016605 [exp] 138 / 4e-39 AT5G55590 409 / 3e-142 QUARTET 1, Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 138 / 7e-39 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 137 / 2e-38 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 135 / 3e-38 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G156300 [exp] 259 / 1e-86 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.018G068400 [exp] 142 / 1e-40 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G365700 [exp] 138 / 1e-38 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 137 / 1e-38 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 137 / 1e-38 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 137 / 1e-38 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114900 [exp] 137 / 1e-38 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 137 / 1e-38 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 136 / 2e-38 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 135 / 3e-38 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10000045 pacid=23173314 polypeptide=Lus10000045 locus=Lus10000045.g ID=Lus10000045.BGIv1.0 annot-version=v1.0 ATGATGATGATCCACCGTCTAGCAACAACCATTATCCTAGCACTACTATTACTCCAATTCCAAACTACCCTAGCTTCTGATGCTTCACCTACTCCTCCAA AGGACTGGTCAGTGGCCAATCTGATAAGGGTGGACAATTCCGCCGCTGGGAGAGGAGATTTCGAGACGATCCAGGAAGCAATCGACTCGGTTCCTTCTAA CAACTCCGAGCTGGTCTTCATCTGGGTCAAGCCAGGAGTCTACGTCGAGAAAGTCATAGTGCCGAAGGACAAGCCTTTCATCACCCTAGGTGGTACCAAG CCAGCTGCGAACGACACTGTCGTTACGTGGCACGAGAAGGGGGATATATTCGAGTCTGCCACTCTGTCTGTTCTGGCTCCGTACTTTGTAGCTCGATACC TTACTATCCAGAACACGTTCGGGAGAGGAGGCAAAGCTGTGGCGTTGAGGGTATCGGGAGACAGAGCTGCATTCTTCGATTGCAAGATGTTGTCGTACCA GGATACGCTTCTCGACGACACTGGATCGCATTACTATCGAAACTGTTACATCGAAGGAGCCACCGATTTCATCTGCGGAGACGCTTCCTCCCTCTTCGAG GCGAGCGATATCTCTTTGCTTGTTACATCTCTGTTTCACAGTAGAGAATGA
AA sequence Show only first row Show all	>Lus10000045 pacid=23173314 polypeptide=Lus10000045 locus=Lus10000045.g ID=Lus10000045.BGIv1.0 annot-version=v1.0 MMMIHRLATTIILALLLLQFQTTLASDASPTPPKDWSVANLIRVDNSAAGRGDFETIQEAIDSVPSNNSELVFIWVKPGVYVEKVIVPKDKPFITLGGTK PAANDTVVTWHEKGDIFESATLSVLAPYFVARYLTIQNTFGRGGKAVALRVSGDRAAFFDCKMLSYQDTLLDDTGSHYYRNCYIEGATDFICGDASSLFE ASDISLLVTSLFHSRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10000045 [exp]	0	1
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10023560 [exp]	1.0	0.9910
AT2G21610		PE11, ATPE11	A. THALIANA PECTINESTERASE 11,...		Lus10040446 [exp]	1.4	0.9593
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10026966 [exp]	2.4	0.8946
AT5G55250		AtIAMT1, IAMT1	IAA carboxylmethyltransferase ...		Lus10043177 [exp]	2.8	0.8986
					Lus10023006 [exp]	6.9	0.8813
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Lus10004705 [exp]	9.9	0.9140
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10019030 [exp]	11.6	0.8662
					Lus10018556 [exp]	12.2	0.8976
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10010239 [exp]	15.0	0.8654
AT1G69550			disease resistance protein (TI...		Lus10017420 [exp]	17.9	0.8709

Compare expression of checked genes

Lus10000045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.