Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26355 109 / 3e-32 SP1L1 SPIRAL1-like1 (.1) AT1G69230 99 / 3e-28 SP1L2 SPIRAL1-like2 (.1.2) AT2G03680 84 / 4e-22 SKU6, SPR1 spiral1 (.1.2) AT3G02180 78 / 1e-19 SP1L3 SPIRAL1-like3 (.1.2.3) AT5G15600 78 / 1e-19 SP1L4 SPIRAL1-like4 (.1) AT4G23496 70 / 8e-17 SP1L5 SPIRAL1-like5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036916 [exp] 183 / 3e-61 AT1G26355 146 / 7e-47 SPIRAL1-like1 (.1) Lus10037069 [exp] 172 / 4e-57 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10026672 [exp] 113 / 9e-34 AT1G26355 149 / 4e-48 SPIRAL1-like1 (.1) Lus10026670 [exp] 113 / 1e-33 AT1G26355 150 / 1e-48 SPIRAL1-like1 (.1) Lus10004642 [exp] 110 / 2e-32 AT1G26355 147 / 2e-47 SPIRAL1-like1 (.1) Lus10034675 [exp] 91 / 2e-24 AT1G26355 127 / 5e-39 SPIRAL1-like1 (.1) Lus10032988 [exp] 76 / 8e-19 AT1G69230 99 / 8e-28 SPIRAL1-like2 (.1.2) Lus10024667 [exp] 67 / 4e-16 AT4G23496 74 / 2e-19 SPIRAL1-like5 (.1) Lus10032297 [exp] 68 / 5e-16 AT1G69230 98 / 7e-28 SPIRAL1-like2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097000 [exp] 107 / 2e-31 AT1G26355 127 / 2e-39 SPIRAL1-like1 (.1) Potri.010G157600 [exp] 103 / 6e-30 AT1G26355 120 / 1e-36 SPIRAL1-like1 (.1) Potri.017G095200 [exp] 95 / 2e-26 AT1G69230 94 / 2e-26 SPIRAL1-like2 (.1.2) Potri.015G059100 [exp] 86 / 5e-23 AT1G26355 98 / 1e-27 SPIRAL1-like1 (.1) Potri.001G100100 [exp] 73 / 6e-18 AT4G23496 81 / 2e-21 SPIRAL1-like5 (.1) Potri.003G131600 [exp] 71 / 3e-17 AT4G23496 81 / 4e-21 SPIRAL1-like5 (.1) Potri.T124504 [exp] 56 / 4e-10 AT1G19270 182 / 3e-53 DA1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000046 pacid=23182078 polypeptide=Lus10000046 locus=Lus10000046.g ID=Lus10000046.BGIv1.0 annot-version=v1.0 ATGGGCCGTGGAGTTAGCAGCGGCGGAGGGCAGAGTTCGTTAGGATATCTATTCGGGAGTGGTGAAGCACCCAAACCTGCTAAACCTAGTGTCGAGACAG CTGCCCCTGTTGAGGCCGAGACTATAAATGTTAGGCCGATCTCGAAACCTGCTCCTCCAGTAGATGTCGCAAAGCAGATTCCCGCCGGCATTAACAGTAC TTCCTCGAACAACTACATGCGCGCTGATGGCCAGAACGCCGGCAACTTCCTCACTGACCGACCTTCAACGAAAGTTCATGCTGCACCAGGAGGCGGATCT TCTCTGGGTTACCTGTTTGGTAACGGTGGTAGTAAATGA
AA sequence Show only first row Show all	>Lus10000046 pacid=23182078 polypeptide=Lus10000046 locus=Lus10000046.g ID=Lus10000046.BGIv1.0 annot-version=v1.0 MGRGVSSGGGQSSLGYLFGSGEAPKPAKPSVETAAPVEAETINVRPISKPAPPVDVAKQIPAGINSTSSNNYMRADGQNAGNFLTDRPSTKVHAAPGGGS SLGYLFGNGGSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10000046 [exp]	0	1
AT2G24290			Protein of unknown function (D...		Lus10036299 [exp]	2.8	0.8148
AT1G17890		GER2	NAD(P)-binding Rossmann-fold s...		Lus10037102 [exp]	4.2	0.8075
AT5G03440			unknown protein		Lus10026537 [exp]	7.5	0.7609
AT5G01710			methyltransferases (.1)		Lus10012217 [exp]	9.2	0.8158
AT4G16430	bHLH	bHLH003, INU3	basic helix-loop-helix (bHLH) ...		Lus10024871 [exp]	10.9	0.7744
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006571 [exp]	13.7	0.8013
AT4G17615		ATCBL1, SCABP5,...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10000995 [exp]	14.8	0.7996
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10029215 [exp]	15.1	0.7868
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	16.9	0.7657
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Lus10010880 [exp]	19.3	0.7986

Compare expression of checked genes

Lus10000046 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.