Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22830 124 / 1e-33 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G51910 71 / 9e-15 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT4G17750 68 / 2e-13 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 67 / 8e-13 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT1G32330 66 / 1e-12 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT2G26150 63 / 1e-11 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G02990 59 / 2e-10 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT3G63350 58 / 4e-10 HSF AT-HSFA7B HEAT SHOCK TRANSCRIPTION FACTOR A7B, winged-helix DNA-binding transcription factor family protein (.1) AT3G24520 43 / 6e-05 HSF AT-HSFC1 heat shock transcription factor C1 (.1) AT5G03720 42 / 0.0002 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006618 [exp] 410 / 4e-145 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 310 / 5e-106 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 109 / 2e-28 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 103 / 5e-26 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 85 / 2e-19 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10013797 [exp] 69 / 7e-14 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10039134 [exp] 67 / 5e-13 AT2G26150 292 / 7e-97 heat shock transcription factor A2 (.1.2) Lus10000312 [exp] 65 / 4e-12 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 65 / 4e-12 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G082000 [exp] 141 / 1e-40 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 139 / 5e-40 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 113 / 7e-30 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 109 / 2e-28 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G138900 [exp] 71 / 3e-14 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 64 / 5e-12 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 63 / 1e-11 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.006G226800 [exp] 62 / 4e-11 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.006G148200 [exp] 53 / 3e-08 AT2G26150 256 / 4e-81 heat shock transcription factor A2 (.1.2) Potri.010G104300 [exp] 49 / 6e-07 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000049 pacid=23162261 polypeptide=Lus10000049 locus=Lus10000049.g ID=Lus10000049.BGIv1.0 annot-version=v1.0 ATGACGGAGCTAGTGAAGCTGAGGCAGCAGCAGCAGACCACCAAAGAATGCCTCCAGATGATGGAGCAAAGGCTGAGGCGGAATGAGGCCAAGCAGCAGC AGATGATGACTTTCCTCGCAAGAGCAGTAAAGAACCCGGACTTGGTGCAGCAGCTGGTGCATCAGAAGGGTATCATGAGGGAGCTTGAGAATGCCATCAC TAAGAAAAGAAGACGGCGCCCAATTGATCAAGCACCTATTCATATTAACAATGCTGAGGCAGGAGATGATAGTTTTGTGAAGATTGAGCCTGCAGATGAG GAGGAGGAAGAGTTTGGTAGAGTGAATGGTCATGACATTGCTGAGTTGGACTCGTTGGCTCTGGACATTCAAGCTGGGCTTGGTGGATTTTCAGGAACAA GAAGCATTGAAAATTTTGAAGAGGAAGGAGGAATTGAAGTTGATCATCATGGGAGGACTTGTAAGTTTAATGATGATCATGAAGGGTACTTATGGGAACA TTTAATGGATGATGATGAAATTGGGAAAACAATGGGTTTGAATATGGGAGGTGGTCATCAAGATGATAGGAATGTGGATGTGCTTTTGGAGCAGTTGGGT TTATTGGATTCTGACATTATTATGTAG
AA sequence Show only first row Show all	>Lus10000049 pacid=23162261 polypeptide=Lus10000049 locus=Lus10000049.g ID=Lus10000049.BGIv1.0 annot-version=v1.0 MTELVKLRQQQQTTKECLQMMEQRLRRNEAKQQQMMTFLARAVKNPDLVQQLVHQKGIMRELENAITKKRRRRPIDQAPIHINNAEAGDDSFVKIEPADE EEEEFGRVNGHDIAELDSLALDIQAGLGGFSGTRSIENFEEEGGIEVDHHGRTCKFNDDHEGYLWEHLMDDDEIGKTMGLNMGGGHQDDRNVDVLLEQLG LLDSDIIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	0	1
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10006618 [exp]	1.4	0.9572
AT5G66440			unknown protein		Lus10041775 [exp]	2.4	0.9517
AT4G01650			Polyketide cyclase / dehydrase...		Lus10007203 [exp]	3.0	0.9155
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	4.6	0.9215
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	5.7	0.9418
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Lus10041499 [exp]	8.0	0.9313
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10020606 [exp]	8.1	0.8866
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10032553 [exp]	8.9	0.8817
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10017681 [exp]	10.3	0.8594
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	10.7	0.9220

Compare expression of checked genes

Lus10000049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.