Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71980 131 / 4e-37 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 115 / 7e-31 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 112 / 1e-30 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 93 / 8e-23 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT5G66160 79 / 2e-18 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006074 [exp] 219 / 1e-70 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 147 / 5e-42 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 143 / 1e-41 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10041896 [exp] 88 / 2e-21 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 88 / 3e-21 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 135 / 1e-38 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 128 / 1e-35 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.005G111100 [exp] 84 / 4e-20 AT5G66160 264 / 3e-88 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10000053 pacid=23141657 polypeptide=Lus10000053 locus=Lus10000053.g ID=Lus10000053.BGIv1.0 annot-version=v1.0 ATGGCAAAATCCGAGCTTCTTCTTCTTCTTCTGGGTTTGTTAGCTTGTTCTTGCTGTTTCTTCATCACCTCCGCCACTGTCGTTCTGATGGGGGATAACG TCACCATGTCCTTCGACGACATCGAAGCCAATTTCGTGGTGCCAGTGAAGGGTGCTGGTGAATGTGGAATGTTGTACGTAGCTGAGCCACTGGATGCTTG CTCAAAATTGAGTAATGAAGTTATTAATAGAGATGAGAATAATTCTTCTACTGCTAGCTCTTCGCCGTTTGTGCTGATTGTTAGAGGAGGAGGGTGTAGC TTTGAGGATAAAGTTAGAAGAGCTCAGGCAGCTGGGTTTCGAGCTGCGATCGTTTACGATGATGAAGATGGTGGCTTACTTGTTGCAACTGAGTTTCACC ATGAACATGCTTCATATTCGTGTGATGTTCCAACTTCGGCTTGA
AA sequence Show only first row Show all	>Lus10000053 pacid=23141657 polypeptide=Lus10000053 locus=Lus10000053.g ID=Lus10000053.BGIv1.0 annot-version=v1.0 MAKSELLLLLLGLLACSCCFFITSATVVLMGDNVTMSFDDIEANFVVPVKGAGECGMLYVAEPLDACSKLSNEVINRDENNSSTASSSPFVLIVRGGGCS FEDKVRRAQAAGFRAAIVYDDEDGGLLVATEFHHEHASYSCDVPTSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71980			Protease-associated (PA) RING/...		Lus10000053 [exp]	0	1
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	1.0	0.9556
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Lus10002177 [exp]	2.4	0.9094
AT3G56950		SIP2;1, SIP2	small and basic intrinsic prot...		Lus10027275 [exp]	7.9	0.7826
					Lus10013898 [exp]	10.5	0.8884
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	10.6	0.8886
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	10.7	0.8253
AT2G39210			Major facilitator superfamily ...		Lus10021512 [exp]	11.0	0.8959
AT5G63160		BT1	BTB and TAZ domain protein 1 (...		Lus10033038 [exp]	15.3	0.8875
AT2G29970			Double Clp-N motif-containing ...		Lus10036183 [exp]	16.8	0.8088
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10010373 [exp]	17.1	0.8872

Compare expression of checked genes

Lus10000053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.