Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58170 153 / 6e-43 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 152 / 2e-42 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT5G55480 123 / 2e-32 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 122 / 4e-32 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT4G26690 120 / 2e-31 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66980 117 / 3e-30 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 92 / 2e-21 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT1G74210 48 / 2e-06 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040036 [exp] 212 / 2e-65 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 170 / 7e-49 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10019605 [exp] 162 / 3e-46 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 141 / 7e-39 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10031604 [exp] 109 / 2e-27 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 109 / 2e-27 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 108 / 3e-27 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10032576 [exp] 108 / 5e-27 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10043171 [exp] 104 / 1e-25 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G187600 [exp] 177 / 2e-51 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.018G110600 [exp] 175 / 1e-50 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.001G360700 [exp] 110 / 7e-28 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360800 [exp] 108 / 4e-27 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000055 pacid=23180893 polypeptide=Lus10000055 locus=Lus10000055.g ID=Lus10000055.BGIv1.0 annot-version=v1.0 ATGGTCAAGGAAGAAATAAGCGATATACCCAAGGATACAGCAAAGGAAATCAAGAAATATGCGGATGCAGTCACCTTGACAAGATACTCAATCATTCCCA CTAACGAAGGCTTCACACTCAATTACACAGATGCAGTGCAGTCACTGCAAAGTGAAAACCTGTCTGTGTTTGTCTCCACCCTTTACAACGAATACATCAC ACTTGCATTTGACTACTTTGCAGACCCCATAGTTGAGATCTCTACTTATTTCCATCAAATTGGAGTCAATGGAACCATAACAGAGTACCCGAGAACTGCA AGCAAATATATGAAAAACCCATGCTCGGATCTAAACAATCAGCAGCTAACTCATGTTGTCTTGCCAATCGTACCTGGTTCTCTACTCAACTTCAGCGGAC TGGAACTACCACCCCCAAGTCATCCGAGACCATCTCTAGCTGTTAAAGATATAGGCGATCCACCACTGCCTGCAGTGACTAAAGTTGAAAATCCTCCAGC GGCCGGTCCTCCGTCTTCGTCTGATTCATCTGCTCTCTCGGCTGCTGTCAATATCTGTATTTCCTTCACAGCTGCAGCTGGCGTGTTGCTGAGCTTACTG AACCCCGCCAGTCTATTAGTTTACACATCCATGGCTTAA
AA sequence Show only first row Show all	>Lus10000055 pacid=23180893 polypeptide=Lus10000055 locus=Lus10000055.g ID=Lus10000055.BGIv1.0 annot-version=v1.0 MVKEEISDIPKDTAKEIKKYADAVTLTRYSIIPTNEGFTLNYTDAVQSLQSENLSVFVSTLYNEYITLAFDYFADPIVEISTYFHQIGVNGTITEYPRTA SKYMKNPCSDLNNQQLTHVVLPIVPGSLLNFSGLELPPPSHPRPSLAVKDIGDPPLPAVTKVENPPAAGPPSSSDSSALSAAVNICISFTAAAGVLLSLL NPASLLVYTSMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58050		GDPDL6, SVL4	Glycerophosphodiester phosphod...		Lus10000055 [exp]	0	1
AT5G58170		GDPDL7, SVL5	Glycerophosphodiester phosphod...		Lus10019606 [exp]	2.0	0.8740
AT2G44290			Bifunctional inhibitor/lipid-t...		Lus10017749 [exp]	2.0	0.9047
AT1G77410		BGAL16	beta-galactosidase 16 (.1)		Lus10028538 [exp]	3.0	0.8846
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	4.7	0.8871
					Lus10029790 [exp]	5.5	0.8684
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	5.7	0.8380
AT5G08560			transducin family protein / WD...		Lus10001412 [exp]	6.9	0.8421
AT1G60200			splicing factor PWI domain-con...		Lus10030623 [exp]	8.2	0.8234
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	9.7	0.8690
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Lus10020355 [exp]	9.8	0.7905

Compare expression of checked genes

Lus10000055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.