Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42680 100 / 2e-29 MBF1A, ATMBF1A ARABIDOPSIS THALIANA MULTIPROTEIN BRIDGING FACTOR 1A, multiprotein bridging factor 1A (.1) AT3G58680 97 / 7e-28 MBF1B, ATMBF1B multiprotein bridging factor 1B (.1) AT3G24500 73 / 2e-18 MBF1C, ATMBF1C multiprotein bridging factor 1C (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013686 [exp] 111 / 2e-33 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10017945 [exp] 111 / 2e-33 AT3G58680 224 / 5e-77 multiprotein bridging factor 1B (.1) Lus10021776 [exp] 71 / 2e-17 AT3G24500 202 / 8e-68 multiprotein bridging factor 1C (.1.2) Lus10034592 [exp] 71 / 2e-17 AT3G24500 201 / 1e-67 multiprotein bridging factor 1C (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390400 [exp] 107 / 3e-32 AT3G58680 242 / 6e-84 multiprotein bridging factor 1B (.1) Potri.011G109500 [exp] 107 / 5e-32 AT3G58680 240 / 3e-83 multiprotein bridging factor 1B (.1) Potri.018G075200 [exp] 80 / 3e-21 AT3G24500 223 / 4e-76 multiprotein bridging factor 1C (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01381 [flax] [poplar] HTH_3 Helix-turn-helix
Representative CDS sequence Show only first row Show all	>Lus10000056 pacid=23149790 polypeptide=Lus10000056 locus=Lus10000056.g ID=Lus10000056.BGIv1.0 annot-version=v1.0 ATGCAAGGTCGGATGGATAAGAAGCTTACCCAGTCTCAACTTGCTCAGCTCATCAACGAGAAGCCTCAGATAATACAAGAGTACGAGTCCGGAAAAGCCA TTCCCAACCAGCAGATTATAGGCAAGTTAGAGAGAGCTCTTGGAGTGAAGCTGCGAGGTAAGAAGTGA
AA sequence Show only first row Show all	>Lus10000056 pacid=23149790 polypeptide=Lus10000056 locus=Lus10000056.g ID=Lus10000056.BGIv1.0 annot-version=v1.0 MQGRMDKKLTQSQLAQLINEKPQIIQEYESGKAIPNQQIIGKLERALGVKLRGKK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42680		MBF1A, ATMBF1A	ARABIDOPSIS THALIANA MULTIPROT...		Lus10000056 [exp]	0	1
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	1.4	0.9117
AT1G11760		MED32	unknown protein		Lus10034758 [exp]	1.4	0.8966
AT3G18510			unknown protein		Lus10032475 [exp]	1.7	0.8898
AT5G51510			unknown protein		Lus10027200 [exp]	4.0	0.8894
AT1G04290			Thioesterase superfamily prote...		Lus10004288 [exp]	4.5	0.8871
AT1G67620			Lojap-related protein (.1)		Lus10015822 [exp]	4.5	0.8798
AT4G00530			unknown protein		Lus10037854 [exp]	5.7	0.8741
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Lus10030583 [exp]	5.7	0.8835
AT4G08460			Protein of unknown function (D...		Lus10024758 [exp]	6.9	0.8435
AT3G06610			DNA-binding enhancer protein-r...		Lus10037773 [exp]	7.3	0.8807

Compare expression of checked genes

Lus10000056 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.