Plant FIBer expression Database

Lus10000058 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46910 112 / 7e-32 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036340
[exp]
136 / 9e-42 AT2G46910 325 / 6e-113 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Lus10010277
[exp]
95 / 2e-25 AT2G46910 266 / 5e-89 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Lus10035384
[exp]
38 / 0.0004 AT2G35490 357 / 5e-122 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Lus10030987
[exp]
37 / 0.0005 AT2G35490 354 / 5e-121 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G183700
[exp]
109 / 5e-31 AT2G46910 366 / 2e-128 Plastid-lipid associated protein PAP / fibrillin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04755 PAP_fibrillin PAP_fibrillin
Representative CDS sequence
>Lus10000058 pacid=23149315 polypeptide=Lus10000058 locus=Lus10000058.g ID=Lus10000058.BGIv1.0 annot-version=v1.0
ATGATTGTTTTTTTGTGGCAGGTAAACTTGGAAGGATGCAACAGTGGTTCTCCAATCGACCTGTTGCTGCTAGATGGAACTTGGCGCCTGCAGTATACTT
CTGCCTCTGATGCCCTCGTGCTTTTCGAGGCTGCCGCAAAGCTTCCTTTCTTCCAGGTTGGGCAGATATTTCAAAAATTCGAGTGTCGGGATCGGTCTGA
TGGTGGTGTCATTCGTAATGGAGTGTTCCTTCATTGTTGGAGGTGA
AA sequence
>Lus10000058 pacid=23149315 polypeptide=Lus10000058 locus=Lus10000058.g ID=Lus10000058.BGIv1.0 annot-version=v1.0
MIVFLWQVNLEGCNSGSPIDLLLLDGTWRLQYTSASDALVLFEAAAKLPFFQVGQIFQKFECRDRSDGGVIRNGVFLHCWR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G46910 Plastid-lipid associated prote... Lus10000058
[exp]
0 1
AT3G21690 MATE efflux family protein (.1... Lus10002067
[exp]
7.8 0.7816
AT5G57670 Protein kinase superfamily pro... Lus10015516
[exp]
10.2 0.7745
AT2G26710 CYP72B1, CYP734... PHYB ACTIVATION TAGGED SUPPRES... Lus10002108
[exp]
14.7 0.7542
AT3G50310 MKKK20, MAPKKK2... MAPKK kinase 20, mitogen-activ... Lus10029047
[exp]
16.1 0.6940
AT2G48150 ATGPX4 glutathione peroxidase 4 (.1) Lus10042692
[exp]
32.5 0.7536
AT1G33970 P-loop containing nucleoside t... Lus10009482
[exp]
33.2 0.7479
Lus10040989
[exp]
33.5 0.6832
AT5G62360 Plant invertase/pectin methyle... Lus10038915
[exp]
34.5 0.7362
AT2G46910 Plastid-lipid associated prote... Lus10010277
[exp]
38.6 0.7369
AT5G05690 CBB3, DWF3, CYP... DWARF 3, CYTOCHROME P450 90A1,... Lus10014850
[exp]
51.1 0.7322

Lus10000058 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.