Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16310 157 / 4e-46 Cation efflux family protein (.1) AT1G79520 149 / 4e-43 Cation efflux family protein (.1.2) AT2G39450 119 / 9e-32 ATMTP11 Cation efflux family protein (.1) AT3G58060 95 / 9e-23 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009598 [exp] 354 / 1e-122 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 352 / 5e-121 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 120 / 3e-32 AT2G39450 587 / 0.0 Cation efflux family protein (.1) Lus10023439 [exp] 118 / 2e-31 AT2G39450 585 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 96 / 5e-23 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10016239 [exp] 96 / 5e-23 AT3G58060 574 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G172700 [exp] 231 / 7e-75 AT1G16310 545 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 216 / 8e-69 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 192 / 9e-60 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.010G172800 [exp] 160 / 2e-47 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G172900 [exp] 153 / 3e-44 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 123 / 3e-33 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 122 / 6e-33 AT2G39450 595 / 0.0 Cation efflux family protein (.1) Potri.001G010000 [exp] 97 / 1e-23 AT3G58060 529 / 0.0 Cation efflux family protein (.1) Potri.001G010200 [exp] 97 / 2e-23 AT3G58060 540 / 0.0 Cation efflux family protein (.1) Potri.003G215600 [exp] 94 / 2e-22 AT3G58060 521 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10000061 pacid=23164946 polypeptide=Lus10000061 locus=Lus10000061.g ID=Lus10000061.BGIv1.0 annot-version=v1.0 ATGGTGGGGAACCGTACGCCTAGTCCGCGAATCGATTCATTCGATTACAGAGTCGAGCTTCTGTCGCCACCACCACCGGGAGAGAGGGCAGCTCAAACCA GTTTACCTTCATGGCGTCTTGATATTGACAAATTCCAGCTCCCATCTGATACTACTACTTGTACTAGTACTACTACTATCAGTACTAGTACACCTCGGAG GCAGCAGCAGCGTCAAATCCCTTCTTTTCTTGCATCCCTGCGGAAGAAAGAAAGGAAGGTGGCACAATACTACAAGGCACAGCAGGACCTTGTGAAGGAG TTCAATGAAGTGGAGTCCTTCGCCGAGTGTGGGGTTATGCCGGGAGGAGAAATGACAGATAAGGAAATTAGAGATGTCGCTAGGGGCGAAAAGATTGCGA TATACGCGTCCAACGTGGCGAATCTGGTGCTGTTTGTGGCCAAAGTGTATGCTTCGATGGAGAGCAAATCGATGGCGGTCATTGCTTCCACGGTTGACTC TTTCCTGGACCTCATGTCAGGGTTCATCCTGTGGTTTACTGACCATGCCATGAGAAAGCCGAACCAGTATCGCTATCCGATTGGCAAACAGAGGATGCAG CCCGTGGTTAGTACCAAATCTGTTAAGTACTTTCTACGTACTAGTACCGAGTAG
AA sequence Show only first row Show all	>Lus10000061 pacid=23164946 polypeptide=Lus10000061 locus=Lus10000061.g ID=Lus10000061.BGIv1.0 annot-version=v1.0 MVGNRTPSPRIDSFDYRVELLSPPPPGERAAQTSLPSWRLDIDKFQLPSDTTTCTSTTTISTSTPRRQQQRQIPSFLASLRKKERKVAQYYKAQQDLVKE FNEVESFAECGVMPGGEMTDKEIRDVARGEKIAIYASNVANLVLFVAKVYASMESKSMAVIASTVDSFLDLMSGFILWFTDHAMRKPNQYRYPIGKQRMQ PVVSTKSVKYFLRTSTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	0	1
AT2G18150			Peroxidase superfamily protein...		Lus10028337 [exp]	2.4	0.9600
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10007034 [exp]	6.6	0.9278
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	6.7	0.9353
AT1G29000			Heavy metal transport/detoxifi...		Lus10011893 [exp]	7.5	0.9343
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026235 [exp]	9.6	0.9189
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	11.4	0.9423
AT4G11650		ATOSM34	osmotin 34 (.1)		Lus10006690 [exp]	12.2	0.9187
AT1G79700	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041618 [exp]	12.6	0.9222
					Lus10008301 [exp]	14.8	0.9341
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10035621 [exp]	16.5	0.9215

Compare expression of checked genes

Lus10000061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.