Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60820 232 / 6e-79 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015867 [exp] 282 / 1e-98 AT3G60820 379 / 2e-135 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009294 [exp] 220 / 7e-68 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Lus10004024 [exp] 186 / 7e-61 AT3G60820 190 / 4e-61 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10030272 [exp] 93 / 5e-26 AT3G60820 81 / 2e-20 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G148300 [exp] 240 / 5e-82 AT3G60820 387 / 2e-138 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.014G069800 [exp] 236 / 2e-80 AT3G60820 362 / 6e-129 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.002G080800 [exp] 47 / 5e-07 AT1G21720 383 / 1e-137 proteasome beta subunit C1 (.1) Potri.005G180500 [exp] 45 / 2e-06 AT1G21720 391 / 9e-141 proteasome beta subunit C1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10000062 pacid=23154277 polypeptide=Lus10000062 locus=Lus10000062.g ID=Lus10000062.BGIv1.0 annot-version=v1.0 ATGAGCTGTTCTGCTATGGGTCAACTACTCTCTAACACCCTCTACTACAAACGTTTCTTCCCTTACTACACCTTTAATATTCTGGGTGGCCTCGACAATG AAGGCAAGGGATGTGTTTACACGTATGATGCTGTTGGTTCCTATGAGATGGTGGGGTACAGCTCCCAGGGTTCTGGTTCTAAACTGATCATGCCTTTCCT TGACAACCAGTTGAAGTCTCCAAGCCCTCTATTAGAGCCAGCGCAGGATGCTGTGACTCCACTTTCTGAGTCTGAAGCAATTGATTTAGTGAAAACTTGT TTTGCTTCTGCAACCGAGAGGGACATACACACTGGAGACAAGCTTGAAATAGTTGTGCTCAATGGTGATGGCATTCGTCGTGAATTTATGGAGTTGAGAA AGGACTAG
AA sequence Show only first row Show all	>Lus10000062 pacid=23154277 polypeptide=Lus10000062 locus=Lus10000062.g ID=Lus10000062.BGIv1.0 annot-version=v1.0 MSCSAMGQLLSNTLYYKRFFPYYTFNILGGLDNEGKGCVYTYDAVGSYEMVGYSSQGSGSKLIMPFLDNQLKSPSPLLEPAQDAVTPLSESEAIDLVKTC FASATERDIHTGDKLEIVVLNGDGIRREFMELRKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60820		PBF1	N-terminal nucleophile aminohy...		Lus10000062 [exp]	0	1
AT1G15370			SNARE-like superfamily protein...		Lus10002911 [exp]	5.4	0.7627
AT2G20280	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10023164 [exp]	7.3	0.7355
AT5G14240			Thioredoxin superfamily protei...		Lus10032064 [exp]	8.6	0.7625
AT3G42150			unknown protein		Lus10011614 [exp]	9.4	0.7182
					Lus10008962 [exp]	10.4	0.7059
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10011641 [exp]	11.1	0.7477
AT2G45200		ATGOS12, GOS12	golgi snare 12 (.1.2)		Lus10030294 [exp]	13.1	0.7472
AT5G54750			Transport protein particle (TR...		Lus10028720 [exp]	15.8	0.7444
AT5G55640			unknown protein		Lus10043162 [exp]	21.7	0.7069
AT5G49060			Heat shock protein DnaJ, N-ter...		Lus10037502 [exp]	22.8	0.7018

Compare expression of checked genes

Lus10000062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.