Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48190 244 / 3e-75 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40820 104 / 3e-26 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) AT1G50030 75 / 6e-16 TOR target of rapamycin (.1.2) AT2G17930 40 / 0.0006 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019489 [exp] 294 / 2e-92 AT3G48190 3373 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10043340 [exp] 202 / 3e-68 AT3G48190 137 / 7e-39 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10023991 [exp] 103 / 6e-26 AT5G40820 3276 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10025091 [exp] 102 / 2e-25 AT5G40820 3033 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Lus10023840 [exp] 80 / 9e-18 AT1G50030 239 / 2e-62 target of rapamycin (.1.2) Lus10037246 [exp] 74 / 1e-15 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 74 / 1e-15 AT1G50030 2590 / 0.0 target of rapamycin (.1.2) Lus10043339 [exp] 50 / 3e-07 AT3G48190 321 / 5e-96 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10041911 [exp] 40 / 0.0004 AT2G17930 989 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G076650 [exp] 270 / 4e-84 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G179000 [exp] 102 / 1e-25 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1) Potri.004G147800 [exp] 80 / 7e-18 AT1G50030 252 / 2e-66 target of rapamycin (.1.2) Potri.009G084500 [exp] 74 / 1e-15 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.001G289200 [exp] 73 / 2e-15 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.005G114300 [exp] 42 / 7e-05 AT2G17930 6266 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1) Potri.007G057850 [exp] 42 / 9e-05 AT2G17930 1074 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein with FAT domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02260 [flax] [poplar] FATC FATC domain CL0016 [flax] [poplar] PKinase PF00454 [flax] [poplar] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Lus10000064 pacid=23148063 polypeptide=Lus10000064 locus=Lus10000064.g ID=Lus10000064.BGIv1.0 annot-version=v1.0 ATGGATGATGAACTTTTTCAGGTTGGTTACGTTGTTGGGCTCGGTGACCGACATTCGATGAACATCTTAATTGATCAGGCTACAGCAGAAGTAGTACACA TTGATCTTGAAGTCGCTTTTGAGCAAGGGTTAATGCTGAAAACACCTGAGCGGGTTCCCTTCAGACTTACAAGAGATGTCATCGATGGAATGGGTGTTAC AGGAGTTGAAGGTGTGTTTATTCATGATCCTTTGTATAAATGGGCGTTGTCTCCTCTGAAAGCCTTACAACGGCAAAAGGATACGGATTATGATCTGGAG ACGAGTATGGAAGACTCCGATGATCGAAGCGAGGGGAACAAGGATGCGACGCGGGCGCTACTGCGAGTGAAGCAAAAGCTAGATGGCTACGAAGAAGGGG AGCTGAGAAGTGTGAATGGACAGGTTCAGCAACTGATTCAAGACGCTATTGATTCGGAGCGTCTGTGCCAAATGTTTCCATTGAAGGAACTTTACTTGGA CAATTACTAA
AA sequence Show only first row Show all	>Lus10000064 pacid=23148063 polypeptide=Lus10000064 locus=Lus10000064.g ID=Lus10000064.BGIv1.0 annot-version=v1.0 MDDELFQVGYVVGLGDRHSMNILIDQATAEVVHIDLEVAFEQGLMLKTPERVPFRLTRDVIDGMGVTGVEGVFIHDPLYKWALSPLKALQRQKDTDYDLE TSMEDSDDRSEGNKDATRALLRVKQKLDGYEEGELRSVNGQVQQLIQDAIDSERLCQMFPLKELYLDNY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10000064 [exp]	0	1
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	1.0	0.9311
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	4.5	0.7969
AT5G44070		ATPCS1, ARA8, C...	CADMIUM SENSITIVE 1, ARABIDOPS...		Lus10003623 [exp]	6.2	0.7856
AT4G36980			unknown protein		Lus10019346 [exp]	9.2	0.7831
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Lus10028438 [exp]	9.9	0.7645
AT5G06510	CCAAT	NF-YA10	"nuclear factor Y, subunit A10...		Lus10013592 [exp]	11.8	0.7812
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043339 [exp]	13.0	0.7588
AT1G01770			unknown protein		Lus10014782 [exp]	13.9	0.7700
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10043341 [exp]	14.9	0.7501
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10017604 [exp]	15.8	0.7650

Compare expression of checked genes

Lus10000064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.