Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42600 365 / 4e-121 ATPPC2 phosphoenolpyruvate carboxylase 2 (.1.2) AT3G14940 363 / 1e-120 ATPPC3 phosphoenolpyruvate carboxylase 3 (.1) AT1G53310 363 / 2e-120 ATPEPC1, ATPPC1 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) AT1G68750 126 / 1e-33 ATPPC4 phosphoenolpyruvate carboxylase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017653 [exp] 391 / 4e-131 AT1G53310 1725 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10033610 [exp] 391 / 4e-131 AT1G53310 1722 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10029837 [exp] 386 / 3e-129 AT2G42600 1719 / 0.0 phosphoenolpyruvate carboxylase 2 (.1.2) Lus10020701 [exp] 384 / 4e-128 AT1G53310 1714 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Lus10035050 [exp] 125 / 3e-33 AT1G68750 1560 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Lus10017886 [exp] 125 / 4e-33 AT1G68750 1566 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G391900 [exp] 370 / 2e-123 AT3G14940 1776 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.011G110700 [exp] 368 / 3e-122 AT3G14940 1766 / 0.0 phosphoenolpyruvate carboxylase 3 (.1) Potri.002G214100 [exp] 360 / 3e-119 AT1G53310 1699 / 0.0 PEP\(PHOSPHOENOLPYRUVATE\) CARBOXYLASE 1, phosphoenolpyruvate carboxylase 1 (.1.2.3) Potri.008G114200 [exp] 128 / 2e-34 AT1G68750 1514 / 0.0 phosphoenolpyruvate carboxylase 4 (.1) Potri.010G131800 [exp] 125 / 3e-33 AT1G68750 1536 / 0.0 phosphoenolpyruvate carboxylase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [flax] [poplar] PK_TIM PF00311 [flax] [poplar] PEPcase Phosphoenolpyruvate carboxylase
Representative CDS sequence Show only first row Show all	>Lus10000065 pacid=23159577 polypeptide=Lus10000065 locus=Lus10000065.g ID=Lus10000065.BGIv1.0 annot-version=v1.0 ATGCTTACTCTGGCCAATTTGGCCGAGGAGGTACAGATCGCGTACAGGAGGAGGATCAAGTTGAAGAAGGGGGATTTTGTTGACGAAAACTCAGCAACGA CTGAATCGGATATTGAGGAGACGATTAAGAGGCTTACTGTTCAGTTGAAGAAGTCTCCTGAAGAAGTCTTTGATGCTTTGAAGAACCAGACTGTGGATTT GGTCTTCACCGCTCATCCTACTCAGTCTGTCCGTAGGTCCTTGCTTCAGAAGCACGGGAGGATTCGTGACTGCTTGACTCAGCTGTATGCTAAGGACATT ACTCCTGATGACAAACAGGAACTCGACGAGGCATTGCAGAGAGAGATCCAAGCTGCTTTCCGGACTGATGAGATTCGGAGGACACCTCCTACTCCACAAG ATGAGATGAGGGCAGGAATGAGCTACTTCCATGAGACAATCTGGAAAGGAGTCCCCAAATTCTTGCGCCGTGTCGACACAGCTTTGAAGAACCTTGGTAT CAATGAACGCGTTCCTTACAACGCCCCTCTCATTCAGTTCTCTTCCTGGATGGGCGGTGATCGTGATGGTGAGTTTTGTTGA
AA sequence Show only first row Show all	>Lus10000065 pacid=23159577 polypeptide=Lus10000065 locus=Lus10000065.g ID=Lus10000065.BGIv1.0 annot-version=v1.0 MLTLANLAEEVQIAYRRRIKLKKGDFVDENSATTESDIEETIKRLTVQLKKSPEEVFDALKNQTVDLVFTAHPTQSVRRSLLQKHGRIRDCLTQLYAKDI TPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWKGVPKFLRRVDTALKNLGINERVPYNAPLIQFSSWMGGDRDGEFC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Lus10000065 [exp]	0	1
AT1G53310		ATPEPC1, ATPPC1	PEP\(PHOSPHOENOLPYRUVATE\) CAR...		Lus10017653 [exp]	3.0	0.8900
AT3G58050			unknown protein		Lus10016244 [exp]	3.2	0.9029
AT1G01220		AtFKGP	Arabidopsis thaliana L-fucokin...		Lus10005982 [exp]	4.1	0.9039
AT3G14810		MSL5	mechanosensitive channel of sm...		Lus10005555 [exp]	4.9	0.8786
					Lus10019050 [exp]	4.9	0.8790
AT3G04470			Ankyrin repeat family protein ...		Lus10027961 [exp]	5.5	0.8511
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10015531 [exp]	5.9	0.8789
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	10.4	0.8199
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10027999 [exp]	11.4	0.7663
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10012198 [exp]	13.1	0.8578

Compare expression of checked genes

Lus10000065 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.