Plant FIBer expression Database

Lus10000066 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G24610 189 / 1e-62 unknown protein
AT3G49550 185 / 4e-61 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000077
[exp]
280 / 2e-98 AT3G49550 199 / 8e-67 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G000900
[exp]
198 / 2e-66 AT5G24610 216 / 3e-73 unknown protein
Potri.012G004900
[exp]
194 / 6e-65 AT3G49550 209 / 7e-71 unknown protein
PFAM info
Representative CDS sequence
>Lus10000066 pacid=23182660 polypeptide=Lus10000066 locus=Lus10000066.g ID=Lus10000066.BGIv1.0 annot-version=v1.0
ATGGACGTTTGTGGCAAACAGATGGGAAATGTTATCTATCTGTCAACAATTCTGGGGCGTGATGCGCCTAGTTCTGCTCACAAGTGTGACTGGAAGTGTA
GGAATGAGCATGTTTGTGGTAACATGTATCTCTGCAAGCTGACTGGTCTCACTCACATCTGTGACAAGAATTGTAACCAGAGAATCTTGTATGATAACCA
TACCTCTGTGTGCCGAGCTAGTGGCAAGATGTTCCCGCTCTCTCTCGCTGAGGAACAGGCGGTTCGAGGCGTTCGGAGGAAGCTTGATGCTGAGAGTAGT
AGTACTACTTCTTCTGAGTCGTGTGGTTTTAAGCGCAGGAAGGAAGGTTTCCATGCTTCTTCTCCTTTCAAGAGGTCTTTTGCAGCTGTCACCACCAGTC
CTATCTGCAGCCAAGTTGGAGATGGCATGGATTTGAGCTAG
AA sequence
>Lus10000066 pacid=23182660 polypeptide=Lus10000066 locus=Lus10000066.g ID=Lus10000066.BGIv1.0 annot-version=v1.0
MDVCGKQMGNVIYLSTILGRDAPSSAHKCDWKCRNEHVCGNMYLCKLTGLTHICDKNCNQRILYDNHTSVCRASGKMFPLSLAEEQAVRGVRRKLDAESS
STTSSESCGFKRRKEGFHASSPFKRSFAAVTTSPICSQVGDGMDLS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G24610 unknown protein Lus10000066
[exp]
0 1
AT3G59800 unknown protein Lus10008338
[exp]
28.2 0.7512
AT5G19090 Heavy metal transport/detoxifi... Lus10031514
[exp]
33.5 0.7352
AT3G24150 unknown protein Lus10019404
[exp]
34.6 0.7397
AT1G19690 NAD(P)-binding Rossmann-fold s... Lus10024280
[exp]
36.9 0.7328
AT2G01060 GARP myb-like HTH transcriptional r... Lus10005036
[exp]
51.7 0.7215
AT1G32190 alpha/beta-Hydrolases superfam... Lus10030951
[exp]
54.4 0.7159
AT1G55520 ATTBP2, TBP2 A. THALIANA TATA BINDING PROTE... Lus10020260
[exp]
61.0 0.7146
AT3G20740 FIE1, FIS3, FIE FERTILIZATION-INDEPENDENT ENDO... Lus10011165
[exp]
61.3 0.7314
AT5G64680 unknown protein Lus10011265
[exp]
65.6 0.7352
AT1G65420 NPQ7 NONPHOTOCHEMICAL QUENCHING 7, ... Lus10027674
[exp]
66.5 0.7301

Lus10000066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.