Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30450 386 / 2e-128 HAP5, ATCCC1, CCC1 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036156 [exp] 471 / 4e-161 AT1G30450 1536 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Lus10003407 [exp] 456 / 1e-153 AT1G30450 1520 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G357600 [exp] 391 / 4e-130 AT1G30450 1458 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3) Potri.011G090900 [exp] 389 / 1e-129 AT1G30450 1456 / 0.0 HAPLESS 5, cation-chloride co-transporter 1 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000067 pacid=23156268 polypeptide=Lus10000067 locus=Lus10000067.g ID=Lus10000067.BGIv1.0 annot-version=v1.0 ATGGGCTTGGGAAATCTCAAGCCTAACATTGTGGTGATGAGGTATCCAGAAATATGGCGGCGTGAAAATCTGACAGAGATTCCAGCCACATTTGTGGGAA TTATCAATGACTGCATCGTCGCAAACAAGGCGGTAGTCATTGTGAAGGGTCTTGATGAGTGGCCTAACGAGTATCAAAAGCAATATGGTACGATTGATTT GTATTGGATTGTAAGAGATGGAGGTCTAATGCTCTTGCTTTCGCAGCTCCTGCTTACGAAAGACAGCTTTGAGAGTTGCAAGATTCAGGTATTCTGCATT GCGGAGGAGGATTCAGATGCAGAGGAGCTGAAAGCTGATGTGAAGAAGTTCTTATACGATCTACGAATGCAAGCTGAAGTGATAGTGATATCAATGAAAT CATGGCACTCAAATGCAGAAGGTGCTCAACCGGACGAATCATTGGAAGCATTCAATGCTGCTCAAAAGAGAATTGCGAGTAATTTATCGGAGATGAGGTC GAATATGTCAGTGAACGAGCAGCAGGTAGACAAATATCTTCAAACAACGCTGAAATTGAACACAACCATATTAAGACATTCGAGAATGGCTGCAGTGGTA CTTGTGAGCTTGCCGCCGCCTCCAGATAACCATCCAGCCTACTTCTACATGGAATACATGGATCTATTAGTAGAGAATGTGCCAAGGCTTTTAATTGTCA GAGGCTACCGTAAAGATGTTGTAACATTGTTTACATAG
AA sequence Show only first row Show all	>Lus10000067 pacid=23156268 polypeptide=Lus10000067 locus=Lus10000067.g ID=Lus10000067.BGIv1.0 annot-version=v1.0 MGLGNLKPNIVVMRYPEIWRRENLTEIPATFVGIINDCIVANKAVVIVKGLDEWPNEYQKQYGTIDLYWIVRDGGLMLLLSQLLLTKDSFESCKIQVFCI AEEDSDAEELKADVKKFLYDLRMQAEVIVISMKSWHSNAEGAQPDESLEAFNAAQKRIASNLSEMRSNMSVNEQQVDKYLQTTLKLNTTILRHSRMAAVV LVSLPPPPDNHPAYFYMEYMDLLVENVPRLLIVRGYRKDVVTLFT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G30450		HAP5, ATCCC1, C...	HAPLESS 5, cation-chloride co-...		Lus10000067 [exp]	0	1
AT5G40230			nodulin MtN21 /EamA-like trans...		Lus10034877 [exp]	3.9	0.7568
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10043160 [exp]	10.2	0.7858
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	15.6	0.7821
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	24.0	0.7340
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	24.4	0.7477
AT2G33205			Serinc-domain containing serin...		Lus10023690 [exp]	26.5	0.6914
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10026651 [exp]	27.0	0.7397
AT3G61260			Remorin family protein (.1)		Lus10027460 [exp]	27.5	0.7303
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	32.0	0.7010
AT1G26810		GALT1	galactosyltransferase1 (.1)		Lus10037171 [exp]	38.4	0.6927

Compare expression of checked genes

Lus10000067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.