Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38900 199 / 4e-61 bZIP AtbZIP29 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G21230 186 / 3e-56 bZIP AtbZIP30 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT2G40620 150 / 5e-44 bZIP AtbZIP18 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G43700 149 / 9e-44 bZIP SUE3, AtbZIP51, VIP1 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) AT2G31370 148 / 5e-43 bZIP AtbZIP59, PosF21 Basic-leucine zipper (bZIP) transcription factor family protein AT1G06070 148 / 8e-43 bZIP AtbZIP69 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT1G06850 145 / 3e-42 bZIP ATBZIP52 basic leucine-zipper 52 (.1.2) AT2G13150 102 / 9e-27 bZIP AtbZIP31 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12900 99 / 5e-25 bZIP AtbZIP33 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G12940 96 / 7e-24 bZIP UNE4 unfertilized embryo sac 4, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033174 [exp] 343 / 2e-118 AT4G38900 283 / 7e-90 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10010616 [exp] 306 / 6e-104 AT4G38900 276 / 1e-87 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012390 [exp] 254 / 2e-83 AT4G38900 337 / 8e-111 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10024314 [exp] 245 / 6e-80 AT4G38900 337 / 1e-110 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10012391 [exp] 229 / 3e-77 AT4G38900 196 / 3e-60 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10042057 [exp] 209 / 8e-65 AT4G38900 522 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018061 [exp] 209 / 9e-65 AT4G38900 529 / 0.0 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Lus10018899 [exp] 162 / 7e-49 AT1G43700 287 / 7e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Lus10028595 [exp] 158 / 2e-47 AT1G43700 289 / 1e-96 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G125400 [exp] 216 / 5e-67 AT4G38900 481 / 1e-164 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.004G163800 [exp] 215 / 1e-66 AT4G38900 425 / 1e-142 Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) Potri.019G130000 [exp] 158 / 8e-47 AT2G40620 289 / 4e-95 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G069500 [exp] 154 / 9e-46 AT1G43700 238 / 4e-76 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.005G190700 [exp] 153 / 1e-45 AT1G43700 219 / 2e-69 sulphate utilization efficiency 3, VIRE2-interacting protein 1 (.1) Potri.013G156900 [exp] 152 / 1e-44 AT2G40620 291 / 5e-96 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G091400 [exp] 150 / 3e-44 AT2G40620 300 / 2e-100 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.017G027400 [exp] 149 / 4e-43 AT1G06070 471 / 2e-165 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.007G130800 [exp] 148 / 6e-43 AT1G06070 392 / 9e-135 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.013G124400 [exp] 85 / 1e-19 AT3G58120 293 / 2e-98 Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10000069 pacid=23170840 polypeptide=Lus10000069 locus=Lus10000069.g ID=Lus10000069.BGIv1.0 annot-version=v1.0 ATGATCATGAAGCTTCCTCCTTTGGGGGTTCGAGTTGGTCAACACCACTCCCCTAGCAGCAGCTCAATGCAAGGGAATCTCAGCAAATTCAACTTGGAGT TTGGAAATGGGGAATTTACTGAACTTGAGCTGAAGAAGATTATGTCGAATGACAAGCTGACGGAGCTTGCAATGGCTGATCCAAAGCGTGTTAAAAGGAT CCTGGCGAATCGTTTATCAGCTGCCCGGTCCAAGGAGCGAAAGATGAGGTACATTGCTGAATTAGAGCTGAAGGTGCAAGGTTTACAGGCTGAAGCAACT GCCTTGTCCGCCCAAGTTACAGTGTTGCAGCGTGATTCCGCAAATCTTACGAGCCAGAACAACGAACTCAAATTCAGGCTACAGTCAATTGAACAACAGG CACAACTCAAAGATGCTCTGAATGAAGCATTAGTTGCGGAAGTCCAACGACTGAGGCTTGCAGCATCAGAGGTCGGAGCAGATTCTCATCATCATCATGA GCAGCAGCCGCAGCAGCTTCCTGTTAATCATCAGATGATTCAACCAGGCCAGGCGAATACATATCAGCAGCAGCAGGAGCTAAACCAAGCACAAAACAGC AGCAACTAA
AA sequence Show only first row Show all	>Lus10000069 pacid=23170840 polypeptide=Lus10000069 locus=Lus10000069.g ID=Lus10000069.BGIv1.0 annot-version=v1.0 MIMKLPPLGVRVGQHHSPSSSSMQGNLSKFNLEFGNGEFTELELKKIMSNDKLTELAMADPKRVKRILANRLSAARSKERKMRYIAELELKVQGLQAEAT ALSAQVTVLQRDSANLTSQNNELKFRLQSIEQQAQLKDALNEALVAEVQRLRLAASEVGADSHHHHEQQPQQLPVNHQMIQPGQANTYQQQQELNQAQNS SN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10000069 [exp]	0	1
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10033174 [exp]	1.4	0.7530
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	9.1	0.7094
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Lus10041662 [exp]	9.6	0.7035
AT2G35795			Chaperone DnaJ-domain superfam...		Lus10036507 [exp]	12.5	0.7008
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023534 [exp]	21.6	0.6972
AT2G39445			Phosphatidylinositol N-acetylg...		Lus10003796 [exp]	23.5	0.6198
AT3G11760			unknown protein		Lus10013598 [exp]	26.2	0.7000
AT4G35980			unknown protein		Lus10042598 [exp]	28.7	0.6921
AT3G16175			Thioesterase superfamily prote...		Lus10037582 [exp]	29.3	0.6852
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Lus10035071 [exp]	42.0	0.6740

Compare expression of checked genes

Lus10000069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.