Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02750 370 / 7e-125 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 239 / 3e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06140 226 / 1e-69 MEF3 mitochondrial editing factor 3, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G53600 229 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09410 228 / 5e-69 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G30700 227 / 2e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G56690 226 / 2e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G13770 223 / 9e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03380 223 / 1e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39350 223 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013264 [exp] 636 / 0 AT2G02750 633 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030787 [exp] 613 / 0 AT2G02750 633 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013149 [exp] 232 / 1e-70 AT1G56690 946 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005064 [exp] 220 / 1e-68 AT2G21090 513 / 2e-179 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027311 [exp] 221 / 3e-68 AT1G33350 621 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031430 [exp] 217 / 1e-67 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024381 [exp] 225 / 2e-67 AT3G23330 777 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040504 [exp] 222 / 2e-67 AT3G13770 904 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016387 [exp] 218 / 3e-67 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G006400 [exp] 245 / 9e-76 AT1G56690 993 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G186500 [exp] 233 / 2e-71 AT3G23330 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G005400 [exp] 232 / 8e-71 AT1G56690 1018 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 231 / 3e-70 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 228 / 6e-70 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G043400 [exp] 227 / 9e-70 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 229 / 3e-69 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G237000 [exp] 226 / 3e-69 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G220300 [exp] 228 / 4e-69 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 226 / 6e-69 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000073 pacid=23146072 polypeptide=Lus10000073 locus=Lus10000073.g ID=Lus10000073.BGIv1.0 annot-version=v1.0 ATGATTTCTGGTCTGATGTTGAATGGTGAAAGTGACAGTGCTGCTGAGTTGTTTGGGCTATTGGAATCCCAAGGGTTGGAACCTGATTCCGTAACGTGGA ATTCGATGATCAGTGGGTTTGCTCAGTTGGATATGGCCAGTAAAGCTTTTCGTTTCTTCAAAAAGATGCAATCTTCTGTAACTGTTCCCAGTTTGAAGTC TGTCACAAGTTTACTGCGAGCTTGTGCATCTTTGTTGGCTATGCAACATGGAAGAGAGGTACACGGGCATGCTATCAGAACTGACCTTCATACGGATGAG TTTATGGCCACTGCTCTTATTGACCTGTATATGAAATGTGGCAACTTTTCGTGGGCAAGACGGATCTTTGATGGATTTGTCGTGAAACCAAGTGACCCAG CATTTTGGAATGTCATGATATCAGGATATGGAGCAAACGGTAACAGTGAATCAGCATTCAAGTTTTTTTATCAGATGCTAAAGGAAAAGGTGAAGCCAAA TTCCGGCACTTTTACTGCTATTCTGTCTGTGTGTAGTCACACAGGACATGTAGACGAAGGATGGAAGGTTTTCAAAATTCTGACTGATGAACATAGCTTG AATCCCAAAGCAGAGCATTTTGGTTGCATGATTGACCTTCTGGGTCGATCTGGCAGGTTGGATGAAGCTAGTAAGCTATTGGAGGGTATTCAAGAGCCAT CTACTTCAGTATTTGCGTCATTGCTTGGCGCTTGTAGGCATCATTTGCAGCCTGACCTTGGGGAACAAGTGGCTATGAAGCTTGTAGAGTTGGAACCAGA TGATCCAACTCCTATTGTGATGCTCTCAAATATATATGCAGGTTTAGGAAGGTGGCAGGATGCAGAAAAAATCAGAATGATACTAAACAGCAGAAAGCTG AAAAAAATTCCCGGTTATAGCTTAATGGGAGTTGCATAA
AA sequence Show only first row Show all	>Lus10000073 pacid=23146072 polypeptide=Lus10000073 locus=Lus10000073.g ID=Lus10000073.BGIv1.0 annot-version=v1.0 MISGLMLNGESDSAAELFGLLESQGLEPDSVTWNSMISGFAQLDMASKAFRFFKKMQSSVTVPSLKSVTSLLRACASLLAMQHGREVHGHAIRTDLHTDE FMATALIDLYMKCGNFSWARRIFDGFVVKPSDPAFWNVMISGYGANGNSESAFKFFYQMLKEKVKPNSGTFTAILSVCSHTGHVDEGWKVFKILTDEHSL NPKAEHFGCMIDLLGRSGRLDEASKLLEGIQEPSTSVFASLLGACRHHLQPDLGEQVAMKLVELEPDDPTPIVMLSNIYAGLGRWQDAEKIRMILNSRKL KKIPGYSLMGVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10000073 [exp]	0	1
AT2G02750			Pentatricopeptide repeat (PPR)...		Lus10013264 [exp]	1.0	0.9212
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Lus10014027 [exp]	2.4	0.9113
AT5G37570			Pentatricopeptide repeat (PPR-...		Lus10014212 [exp]	3.5	0.8875
AT5G46100			Pentatricopeptide repeat (PPR)...		Lus10013972 [exp]	5.9	0.8758
					Lus10019215 [exp]	6.0	0.8587
AT1G56690			Pentatricopeptide repeat (PPR)...		Lus10013149 [exp]	6.5	0.8824
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	6.7	0.8554
AT3G26540			Tetratricopeptide repeat (TPR)...		Lus10015584 [exp]	10.4	0.8840
AT3G49990			unknown protein		Lus10015447 [exp]	12.2	0.8371
AT5G49150		GEX2, ATGEX2	gamete expressed 2 (.1)		Lus10025556 [exp]	13.0	0.8530

Compare expression of checked genes

Lus10000073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.