Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64660 227 / 2e-73 ATMGL methionine gamma-lyase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001672 [exp] 291 / 2e-99 AT1G64660 546 / 0.0 methionine gamma-lyase (.1) Lus10017333 [exp] 291 / 2e-98 AT1G64660 676 / 0.0 methionine gamma-lyase (.1) Lus10000880 [exp] 235 / 1e-76 AT1G64660 639 / 0.0 methionine gamma-lyase (.1) Lus10000881 [exp] 225 / 2e-73 AT1G64660 588 / 0.0 methionine gamma-lyase (.1) Lus10005226 [exp] 40 / 0.0005 AT3G01120 741 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10030694 [exp] 39 / 0.0008 AT3G01120 702 / 0.0 METHIONINE OVERACCUMULATION 1, CYSTATHIONINE GAMMA-SYNTHASE 1, CYSTATHIONINE GAMMA-SYNTHASE, A. thaliana cystathionine gamma-synthetase 1, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10033233 [exp] 0 / 1 AT1G64660 377 / 8e-130 methionine gamma-lyase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G084000 [exp] 238 / 8e-78 AT1G64660 689 / 0.0 methionine gamma-lyase (.1) Potri.003G187032 [exp] 197 / 1e-64 AT1G64660 288 / 2e-96 methionine gamma-lyase (.1) Potri.003G146600 [exp] 58 / 2e-10 AT1G64660 239 / 1e-76 methionine gamma-lyase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF01053 [flax] [poplar] Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme
Representative CDS sequence Show only first row Show all	>Lus10000074 pacid=23164860 polypeptide=Lus10000074 locus=Lus10000074.g ID=Lus10000074.BGIv1.0 annot-version=v1.0 ATGAACGCCAAAGTGGCCTTCGAGCTCTCAGAGAGAGTCCCTCACTTGGGCCTGAGGATGAAAGAGCACTCCAACAGAGCAATGGTTTACGCCGCCAGGA TGAAGAAAATGGGCCTGAAAGTCATCTACCCGGGCCTGGAAGACCACCCGCAGCACCAACTCCTCAAGTCCTTGGCCAACAAGGACTACGGCTTCGGCGG GCTCCTGTCCCTCGACATGGTGACCGAGGACCGGGCCAACCGGCTGATGAACCAGCTCCAGAATGCCACCCAGTTCGGGTTCATGGCCGTTAGCCTGGGC TACTACGAGACCTTGATGTCGTGCTCGGGGAGCAGCACCAGCAGCGAGATGAATGAGGAGGAGAAGCAAGTCGCGGGGATCTCGCCCGGGTTGATTAGGA TGTCGGTCGGGTATGTTGGGACCCTGGAGCAGAAGTGGAGCCAGTTCGAGCGGGCGGTTTCCAGACTGCCTAAGGAGAAAGATCGCGATTGA
AA sequence Show only first row Show all	>Lus10000074 pacid=23164860 polypeptide=Lus10000074 locus=Lus10000074.g ID=Lus10000074.BGIv1.0 annot-version=v1.0 MNAKVAFELSERVPHLGLRMKEHSNRAMVYAARMKKMGLKVIYPGLEDHPQHQLLKSLANKDYGFGGLLSLDMVTEDRANRLMNQLQNATQFGFMAVSLG YYETLMSCSGSSTSSEMNEEEKQVAGISPGLIRMSVGYVGTLEQKWSQFERAVSRLPKEKDRD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000074 [exp]	0	1
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10001672 [exp]	1.0	0.9503
AT1G17860			Kunitz family trypsin and prot...		Lus10013770 [exp]	20.3	0.9118
AT1G17860			Kunitz family trypsin and prot...		Lus10039209 [exp]	22.1	0.8974
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	29.1	0.8856
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Lus10025427 [exp]	38.9	0.8806
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10011013 [exp]	51.7	0.8209
AT4G20820			FAD-binding Berberine family p...		Lus10032943 [exp]	64.1	0.8635
AT3G15980			Coatomer, beta' subunit (.1.2....		Lus10002324 [exp]	67.7	0.8705
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	86.7	0.8605
AT5G62350			Plant invertase/pectin methyle...		Lus10031133 [exp]	94.5	0.8572

Compare expression of checked genes

Lus10000074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.