Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24220 395 / 2e-138 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, 5[beta]-StR, AWI31, VEP1 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G58750 172 / 2e-51 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018705 [exp] 562 / 0 AT4G24220 590 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10032854 [exp] 489 / 1e-175 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10018704 [exp] 359 / 4e-124 AT4G24220 530 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039686 [exp] 224 / 2e-71 AT4G24220 302 / 5e-100 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039689 [exp] 200 / 4e-62 AT4G24220 305 / 4e-101 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040675 [exp] 183 / 2e-55 AT5G58750 421 / 1e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10039687 [exp] 178 / 2e-53 AT4G24220 271 / 8e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10039688 [exp] 90 / 2e-21 AT4G24220 97 / 1e-23 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10027156 [exp] 68 / 6e-14 AT4G24220 79 / 4e-18 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G019300 [exp] 419 / 7e-148 AT4G24220 560 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019700 [exp] 416 / 9e-147 AT4G24220 556 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.003G134500 [exp] 416 / 2e-146 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120700 [exp] 413 / 1e-145 AT4G24220 569 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019600 [exp] 412 / 3e-145 AT4G24220 550 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019400 [exp] 410 / 3e-144 AT4G24220 544 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G120600 [exp] 409 / 7e-144 AT4G24220 577 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G019500 [exp] 405 / 2e-142 AT4G24220 541 / 0.0 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030600 [exp] 222 / 1e-70 AT4G24220 271 / 4e-88 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.017G030700 [exp] 221 / 4e-70 AT4G24220 292 / 2e-96 VEIN PATTERNING 1, Δ4,5-steroid-5[beta]-reductase, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000076 pacid=23154278 polypeptide=Lus10000076 locus=Lus10000076.g ID=Lus10000076.BGIv1.0 annot-version=v1.0 ATGTTCCGGAACCTCCTAGACGCCGTCGTCCCGAACTCCCCCAACCTCCAGCACATCTGTCTTCAGACCGGAGCAAAGCACTACGTCGGACCATTCGAAT CCCTTGGGAAGATCCAGCCCCACGAACCACCTTTCACTGAGGATTTGCCCAGATTGGATGTGCCCAATTTCTACCACACTTTGGAGGACATCCTGTACGA AGAAGCCGACAAGAAGGAAGGATTGACGTGGTCCGTTCACCGCCCCGATCAGATTTGGGGGTTTTCTCCCTACAGTATGATGAACATGATTGGAACGCTC TGTGTTTACGCCGCAATATGTAAACACGAGGGTTTGCCTCTGATTTTCCCAGGGACCAAAGATGCTTGGAACTGTTACGCCAATTCTTCCGACGCTGATC TGATTGCGGAGCATCAGATATGGGCTTCGGTGGATCCTTACGCAAAGAACGAGGCTTTCAACATCGTAAATGCAGATGTGTTCAAGTGGAAGCATTTGTG GAAGGTTTTGGCTGAACAGTTCGGGATAGAGAATTACGGGTTTGAGGAGGATGCAGAGAAGAGGTTAAGCTTGAAGGAGATGATGAAGGATAAAGGGCCA GTTTGGGAAGAGGTTGTGAAGCAGAATCAGCTGGAACCTACGAGGTTGGAGGATGTTGGTAATTGGTGGTTTGTTGATGTTTTGTTTTCTTTGGAGGCTG TGCTGTCGAGCATGAACAAGAGCAAAGAGCATGGGTTTTTGGGGTTTAGGAATTCAAAGAACTCTTTCATTTCCTGGATTGATAGGGTGAAGGGTTACAA GATTGTCCCTTGA
AA sequence Show only first row Show all	>Lus10000076 pacid=23154278 polypeptide=Lus10000076 locus=Lus10000076.g ID=Lus10000076.BGIv1.0 annot-version=v1.0 MFRNLLDAVVPNSPNLQHICLQTGAKHYVGPFESLGKIQPHEPPFTEDLPRLDVPNFYHTLEDILYEEADKKEGLTWSVHRPDQIWGFSPYSMMNMIGTL CVYAAICKHEGLPLIFPGTKDAWNCYANSSDADLIAEHQIWASVDPYAKNEAFNIVNADVFKWKHLWKVLAEQFGIENYGFEEDAEKRLSLKEMMKDKGP VWEEVVKQNQLEPTRLEDVGNWWFVDVLFSLEAVLSSMNKSKEHGFLGFRNSKNSFISWIDRVKGYKIVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10000076 [exp]	0	1
AT3G47800			Galactose mutarotase-like supe...		Lus10023611 [exp]	1.4	0.9581
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Lus10009909 [exp]	2.4	0.9505
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10037550 [exp]	2.4	0.9527
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10022382 [exp]	2.8	0.9484
AT5G05140			Transcription elongation facto...		Lus10039000 [exp]	6.5	0.9380
AT2G17880			Chaperone DnaJ-domain superfam...		Lus10028453 [exp]	6.8	0.9296
AT5G27830			unknown protein		Lus10029881 [exp]	7.1	0.9478
AT3G29270			RING/U-box superfamily protein...		Lus10005220 [exp]	7.7	0.9373
AT3G07310			Protein of unknown function (D...		Lus10025896 [exp]	8.5	0.9419
AT4G26140		BGAL12	beta-galactosidase 12 (.1.2)		Lus10006009 [exp]	8.8	0.9441

Compare expression of checked genes

Lus10000076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.