Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49550 199 / 8e-67 unknown protein AT5G24610 196 / 1e-65 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000066 [exp] 297 / 2e-105 AT5G24610 197 / 5e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G000900 [exp] 214 / 1e-72 AT5G24610 216 / 3e-73 unknown protein Potri.012G004900 [exp] 209 / 1e-70 AT3G49550 209 / 7e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000077 pacid=23174231 polypeptide=Lus10000077 locus=Lus10000077.g ID=Lus10000077.BGIv1.0 annot-version=v1.0 ATGGACGTTTGTGGCAAACAGATGGGAAATGTTATCTATCTGTCAACGATTCTGGGGCGTGATGCGCCTAGTTCTGTTCACAAGTGTGACTGGAAGTGTA GGAATGAGCATGTCTGTGGTAACATGTATCTATGCAAGCTAACTGGTCTCACTCACATCTGTGACAAGAATTGCAACCAGAGAATCTTGTATGATAACCA TACCTCTGTGTGCCGAGCTAGTGGCAAGATGTTCCCACTCTCCCTCGCCGAGGAACAGGCGGTTCGAGGCGTTCGGAGGAAGCTTGATGCTGAGAGTAGT ACTACTACTTCTGAGTCGTGTGGTTTTAAGCGCAGGAAGGAAGGTTTCCATGCTTCTTCTCCTTTCAAGAGGTCTTTTGCTGCTGTCACCACCAGTCCTA TCTGCAGCCAAATTGGAGATGGCATGGATTTGAGCTAG
AA sequence Show only first row Show all	>Lus10000077 pacid=23174231 polypeptide=Lus10000077 locus=Lus10000077.g ID=Lus10000077.BGIv1.0 annot-version=v1.0 MDVCGKQMGNVIYLSTILGRDAPSSVHKCDWKCRNEHVCGNMYLCKLTGLTHICDKNCNQRILYDNHTSVCRASGKMFPLSLAEEQAVRGVRRKLDAESS TTTSESCGFKRRKEGFHASSPFKRSFAAVTTSPICSQIGDGMDLS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G49550			unknown protein		Lus10000077 [exp]	0	1
AT1G77700			Pathogenesis-related thaumatin...		Lus10028079 [exp]	7.2	0.6383
AT3G25430			Polynucleotidyl transferase, r...		Lus10002539 [exp]	8.1	0.7335
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10043137 [exp]	14.1	0.6312
AT3G54880			unknown protein		Lus10038690 [exp]	19.8	0.6002
AT5G50090			unknown protein		Lus10042139 [exp]	24.7	0.6222
AT2G18770			P-loop containing nucleoside t...		Lus10013024 [exp]	25.9	0.6342
AT3G58060			Cation efflux family protein (...		Lus10029304 [exp]	31.5	0.6206
AT5G62070		IQD23	IQ-domain 23 (.1)		Lus10027435 [exp]	38.8	0.5557
AT4G34460		ELK4, AGB1, ATA...	ERECTA-LIKE 4, GTP binding pro...		Lus10023579 [exp]	57.2	0.5888
AT1G75060			unknown protein		Lus10032725 [exp]	63.7	0.5391

Compare expression of checked genes

Lus10000077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.