Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60230 330 / 4e-113 Radical SAM superfamily protein (.1) AT3G19630 106 / 3e-27 Radical SAM superfamily protein (.1) AT2G39670 100 / 6e-25 Radical SAM superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013005 [exp] 407 / 1e-143 AT1G60230 582 / 0.0 Radical SAM superfamily protein (.1) Lus10029159 [exp] 317 / 3e-108 AT1G60230 468 / 2e-163 Radical SAM superfamily protein (.1) Lus10000953 [exp] 91 / 3e-21 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10002698 [exp] 90 / 5e-21 AT2G39670 595 / 0.0 Radical SAM superfamily protein (.1.2) Lus10020989 [exp] 89 / 6e-21 AT3G19630 569 / 0.0 Radical SAM superfamily protein (.1) Lus10005409 [exp] 85 / 2e-19 AT3G19630 568 / 0.0 Radical SAM superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G040700 [exp] 337 / 4e-116 AT1G60230 583 / 0.0 Radical SAM superfamily protein (.1) Potri.008G056500 [exp] 97 / 1e-23 AT2G39670 622 / 0.0 Radical SAM superfamily protein (.1.2) Potri.001G294900 [exp] 95 / 5e-23 AT3G19630 577 / 0.0 Radical SAM superfamily protein (.1) Potri.010G203300 [exp] 48 / 1e-06 AT2G39670 238 / 2e-75 Radical SAM superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000081 pacid=23168994 polypeptide=Lus10000081 locus=Lus10000081.g ID=Lus10000081.BGIv1.0 annot-version=v1.0 ATGGGAGAACCACTGCAGAATATAGACAACGTGATAAAAGCAGCTTACATAATGACTGATGAGCAGGGGCTTCAGTTTAGTCCTCGCAAGGTCACTATTT CGACGAGCGGCCTTGTTCCCCAACTCAAGCGCTTTCTCCGCGAATCGAATTGTGCATTGGCTGTCAGTCTCAACGCAACGACTGATGAGGTCAGAAACTG GATCATGCCAATCAACCGGAAATACAACATCAGCTTGCTTCTCGAAACCCTGCGAGAGGAGCTTCAATCCAGGAACAACTACAAAGTGCTGTTCGAATAT GTAATGCTAGCCGGAGTAAATGACAGCTTGGATGATGCAAGGAGACTCATCGATCTCGTAAAGGGAATTCCGTGCAAGGTGAACCTCATTCAGTTCAACC CGCACTGTGGATCCCCGTTCAAGCCGACCGGCATAGACCGTATGATCGAGTTCCGCAACACGCTTGCAGCAGGGAAATGTGCTGCGTTTCTGAGGGAGAG CAGAGGTGACGATCAAATGGCCGCTTGTGGCCAGCTGGGGAAACTTGGGACGATCCAAGCTCCTAGGCTTAGAGTTCCCGAACAATTCAAGGTTGTTGTA AATGGTTAG
AA sequence Show only first row Show all	>Lus10000081 pacid=23168994 polypeptide=Lus10000081 locus=Lus10000081.g ID=Lus10000081.BGIv1.0 annot-version=v1.0 MGEPLQNIDNVIKAAYIMTDEQGLQFSPRKVTISTSGLVPQLKRFLRESNCALAVSLNATTDEVRNWIMPINRKYNISLLLETLREELQSRNNYKVLFEY VMLAGVNDSLDDARRLIDLVKGIPCKVNLIQFNPHCGSPFKPTGIDRMIEFRNTLAAGKCAAFLRESRGDDQMAACGQLGKLGTIQAPRLRVPEQFKVVV NG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	0	1
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	1.4	0.9361
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	3.6	0.9388
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	4.9	0.9333
AT5G27290			unknown protein		Lus10033822 [exp]	8.7	0.9276
AT4G26555			FKBP-like peptidyl-prolyl cis-...		Lus10027129 [exp]	9.5	0.9203
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	11.2	0.9165
AT1G54680			unknown protein		Lus10018965 [exp]	12.4	0.9034
AT2G03420			unknown protein		Lus10036810 [exp]	12.7	0.9188
AT5G59610			Chaperone DnaJ-domain superfam...		Lus10040777 [exp]	13.5	0.8768
AT2G26540		ATUROS, ATDUF3,...	ARABIDOPSIS THALIANA UROPORPHY...		Lus10032769 [exp]	14.2	0.8481

Compare expression of checked genes

Lus10000081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.