Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 99 / 2e-24 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 67 / 4e-13 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT5G54170 62 / 2e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT3G23080 61 / 8e-11 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033247 [exp] 199 / 2e-62 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 74 / 2e-15 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 72 / 4e-15 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10021883 [exp] 63 / 2e-11 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10041166 [exp] 62 / 4e-11 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151500 [exp] 123 / 4e-33 AT1G64720 515 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.001G450100 [exp] 104 / 2e-26 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 100 / 1e-24 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 99 / 3e-24 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G162600 [exp] 62 / 4e-11 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.010G076500 [exp] 56 / 2e-09 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000083 pacid=23166967 polypeptide=Lus10000083 locus=Lus10000083.g ID=Lus10000083.BGIv1.0 annot-version=v1.0 ATGGCTTTGTGGTCACTCTTACTTGACATTCTCCAACGCCCCAAGCTTCTCGATGTCCTCGCTGAGCTCTCCATCTTAGCTGCTCCTCTCTGGATTGCCG TCGTCGTCGGCGTTCTCGTTGGCTGGTCCTGGAAGCCTAAGTGGGCTGTTCTCTCCGCTCCGCAATCTCCGGCTTCTTCTTTCTCAAGCTTCAAGCTTCA GCTCCCCACCAGCTTCATTCCATGGGTTTCCAGCAACGATTTGAATCAAATCCACTCATCCTCTGCCGCTTCCCCGCCTACCCTGTCTTCTGACTCAAGT TCCGGGAAGGGGAAAACGAGTATTGTATCAACGGATGATTTGGAGTACTTGTCTAAGCTTGTTGAAGTCAAAGATGGAGGCCCTGCTTGGATTCAGATGA TGGACCGTTCTACCCCCACCATGACCTACCAAGCTTGGAGAAGGGATCTTCAGTTTCCTTTCTTCTGTAGCGACAGAGAGTACATCATTGGCCGCCGGAT TTGGGAGTCCGACAGAACATACTACTGTGTCACCAAGGTATTTGGAACTCCTCTGGTTTCTGTTTATACGGTATTACCATGTTTAGCCTATGCGTTTAAC TTCCAATTACAAAAGGACTAG
AA sequence Show only first row Show all	>Lus10000083 pacid=23166967 polypeptide=Lus10000083 locus=Lus10000083.g ID=Lus10000083.BGIv1.0 annot-version=v1.0 MALWSLLLDILQRPKLLDVLAELSILAAPLWIAVVVGVLVGWSWKPKWAVLSAPQSPASSFSSFKLQLPTSFIPWVSSNDLNQIHSSSAASPPTLSSDSS SGKGKTSIVSTDDLEYLSKLVEVKDGGPAWIQMMDRSTPTMTYQAWRRDLQFPFFCSDREYIIGRRIWESDRTYYCVTKVFGTPLVSVYTVLPCLAYAFN FQLQKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23080			Polyketide cyclase/dehydrase a...		Lus10000083 [exp]	0	1
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Lus10006927 [exp]	2.2	0.8963
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10035818 [exp]	2.8	0.8782
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Lus10008281 [exp]	4.9	0.8438
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	10.7	0.8178
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	12.0	0.8377
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10031564 [exp]	13.2	0.8625
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Lus10041119 [exp]	15.9	0.8422
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	16.0	0.8199
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	22.4	0.8167
AT1G22700			Tetratricopeptide repeat (TPR)...		Lus10041265 [exp]	22.9	0.8523

Compare expression of checked genes

Lus10000083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.