Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32160 305 / 3e-103 Protein of unknown function (DUF760) (.1) AT3G17800 243 / 6e-79 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G48450 233 / 7e-75 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT3G07310 134 / 2e-37 Protein of unknown function (DUF760) (.1) AT5G48590 115 / 2e-30 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030993 [exp] 489 / 6e-176 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10035392 [exp] 471 / 1e-168 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10017989 [exp] 231 / 6e-74 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10041984 [exp] 224 / 2e-71 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10038208 [exp] 162 / 8e-48 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10025896 [exp] 162 / 1e-47 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 134 / 2e-37 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 134 / 4e-37 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 130 / 5e-36 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G097400 [exp] 340 / 5e-117 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.015G031200 [exp] 238 / 6e-77 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 226 / 2e-72 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.002G247700 [exp] 147 / 4e-42 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10000084 pacid=23153300 polypeptide=Lus10000084 locus=Lus10000084.g ID=Lus10000084.BGIv1.0 annot-version=v1.0 ATGATACCAAGAATAACAACCTCAGATCTTGGCGGACGAGTGGACTTCTGGCCAAACCAGCAGCATCAACTGGAGTCTGTCCACTCCACTGAAGTCCTCG AAATGATACAAAGCCACTTATCTCTCCTCTTAGGGGATCACCAATCAGTTGGTCCCCTGGATACCATAATAGAGATCAGCAAGATCAAAGTTGGCAAGCT ATACGCAGCTTCAATCATGTACGGATACTTCCTTCGAAGAATCGACCAGAGGTTCCAGCTTGACAGGGCCATGAACACCCTTCCCGAAGGCTACGACGAA AATCGAGCAAGGTATGAAGAACTGAGCTCCAACGCCAAAGGGCTGGTGGACCCACAGTCCTTGCTAACCATGATGCCGGATGGTAGCAGAGGCGACGGAT ATGGCGACGAAGATGGGAAAACGTACAGGCTGAGGTCGTACGTGATGTACTTGGATGCGGAGACACTTCAGCGATACGCAACGGTGAGATCGAAGGAAGC TGTGGGTCTGATCGAGAAGCAGACTCAGGCGCTCTTCGGTAGGCCGGAGATAACGGTTGCTGAGGATGGTTCACTTGGTGCGAGCAATGATGAAGCGATT ACAGTGGCCTTCTCTGGGTTGACAATGCTGGTTTTGGAAGCTGTAGCTTTTGGATCTTTCATGTGGGATTCTGAGAGCTATGTTGAGTCCAAGTACCAGT TCCTCAACGGCTGA
AA sequence Show only first row Show all	>Lus10000084 pacid=23153300 polypeptide=Lus10000084 locus=Lus10000084.g ID=Lus10000084.BGIv1.0 annot-version=v1.0 MIPRITTSDLGGRVDFWPNQQHQLESVHSTEVLEMIQSHLSLLLGDHQSVGPLDTIIEISKIKVGKLYAASIMYGYFLRRIDQRFQLDRAMNTLPEGYDE NRARYEELSSNAKGLVDPQSLLTMMPDGSRGDGYGDEDGKTYRLRSYVMYLDAETLQRYATVRSKEAVGLIEKQTQALFGRPEITVAEDGSLGASNDEAI TVAFSGLTMLVLEAVAFGSFMWDSESYVESKYQFLNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	0	1
AT1G32160			Protein of unknown function (D...		Lus10030993 [exp]	1.0	0.9574
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	10.3	0.8585
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Lus10018155 [exp]	18.4	0.8579
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	20.8	0.8089
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10033664 [exp]	25.0	0.8323
AT2G24860			DnaJ/Hsp40 cysteine-rich domai...		Lus10026899 [exp]	31.0	0.8160
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	40.4	0.7718
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10019387 [exp]	42.4	0.8290
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	42.4	0.7673
					Lus10030774 [exp]	78.3	0.8255

Compare expression of checked genes

Lus10000084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.