Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05670 163 / 6e-44 RING/U-box protein (.1) AT3G01460 44 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015213 [exp] 794 / 0 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 623 / 0 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10013501 [exp] 57 / 9e-09 AT3G05670 118 / 1e-27 RING/U-box protein (.1) Lus10007973 [exp] 45 / 1e-05 AT3G05670 51 / 2e-08 RING/U-box protein (.1) Lus10030864 [exp] 47 / 2e-05 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10030625 [exp] 45 / 7e-05 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008796 [exp] 45 / 0.0001 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10008495 [exp] 44 / 0.0002 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011400 [exp] 231 / 1e-68 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.005G021000 [exp] 230 / 2e-68 AT3G05670 436 / 2e-140 RING/U-box protein (.1) Potri.003G126600 [exp] 45 / 9e-05 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.017G072460 [exp] 45 / 0.0001 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger
Representative CDS sequence Show only first row Show all	>Lus10000086 pacid=23173798 polypeptide=Lus10000086 locus=Lus10000086.g ID=Lus10000086.BGIv1.0 annot-version=v1.0 ATGTTGCTGTGCGACCTCTGCGATTCTCCGGCTCATACCTACTGCGTCGGTCTTGGTCAACAAGTCCCCCCAGGGAACTGGTATTGTGACGGTTGCAGGC CTGCCGGTTCCTCAAGCTCCCAGAACCAACCAGACAATATCCCTTCCGATCAAAGACCGATGCTGGTAAGTAACAGGTTGATCGGACAGACTCCACCGCC ACCCACTGTGTCTAGTTTGGAAGACAGATCGCATCCGATCTCACAGCCTTCCACATTTCCTCAAGCGTTCGGGTCTCCGACGATGTCTCAAGGGCTTCGA ATGGGAGATTCCTCAACTTCGGGAACAGGTGCACAGACGCTATGGAGCAGGCGTGAGATTCAACGCCGTATACAGAACCTTCTATCGAGCAGAATGAATA TGACAGCTGGCGGAGACGATGGAGTCCAAGCTGCAACGAATATTCAACGGATACAGAGTCTTCTATCGAGCAGAATGAACTCGATGGCTGGTGGAATGGG CGGGATCCGAGCTCCCACCAGTGTTTACAGTGGCTTTCCAGGCGCTCGAATCGCTCAGCACGGAGAAATGCCTGCTCGGAATTCGGTCCCTTCTTCTTTA ATTGGTAATAATAGGGAATTTTTAGGGTTTAGAGCAAACCAATGGAGGCCAGCTCAGCAGCAGGGAGCATCAACTGTAGCAGCAGCCATTGAGAGGCCTG TCAATTTGACATTATGGCCTGAAAACTCCGGGATTAATCCGGTTCCGGGTAATCTATATAGCAACCGACCGACCACCAATCGTCTCGGTTTTGATTTCGC ACCTTATGGTGTTGACAACAACAACAATCAATTATACATCTTGAAGGAACAGCTGCAGTCTATGATTACTGCCCATTTGAAGGCCTTGTCCTTAGGACAA GAAACCATGAATGGGATCGTTAGGACTTCGACGAACATAGTCATGGCATATTGCGGGCTAGAGCACGAGAGAGACGAAGTCCGACCTTTACCGTCAGTGC CATCGAGATGCTCCCATGTCGATAGAATCGCTTCTGGACAGACCAGCATAATGAGAGGTTTTTGCTCATCTTGCTTTGAATCAATTGTAAGCGACGTAGT GAAGAATATACTGGATTCAAGGGTTCCAACAAGACTGCCACAATGGCTTAGCCTAGGATTATAG
AA sequence Show only first row Show all	>Lus10000086 pacid=23173798 polypeptide=Lus10000086 locus=Lus10000086.g ID=Lus10000086.BGIv1.0 annot-version=v1.0 MLLCDLCDSPAHTYCVGLGQQVPPGNWYCDGCRPAGSSSSQNQPDNIPSDQRPMLVSNRLIGQTPPPPTVSSLEDRSHPISQPSTFPQAFGSPTMSQGLR MGDSSTSGTGAQTLWSRREIQRRIQNLLSSRMNMTAGGDDGVQAATNIQRIQSLLSSRMNSMAGGMGGIRAPTSVYSGFPGARIAQHGEMPARNSVPSSL IGNNREFLGFRANQWRPAQQQGASTVAAAIERPVNLTLWPENSGINPVPGNLYSNRPTTNRLGFDFAPYGVDNNNNQLYILKEQLQSMITAHLKALSLGQ ETMNGIVRTSTNIVMAYCGLEHERDEVRPLPSVPSRCSHVDRIASGQTSIMRGFCSSCFESIVSDVVKNILDSRVPTRLPQWLSLGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	0	1
AT3G05670			RING/U-box protein (.1)		Lus10031468 [exp]	5.8	0.7747
AT3G55520			FKBP-like peptidyl-prolyl cis-...		Lus10004714 [exp]	7.3	0.7490
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	8.8	0.7803
AT5G62270			unknown protein		Lus10034311 [exp]	12.5	0.7348
AT3G06240			F-box family protein (.1)		Lus10013873 [exp]	20.4	0.7209
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	23.8	0.6964
AT5G42440			Protein kinase superfamily pro...		Lus10001120 [exp]	24.0	0.7229
AT4G25440	C3HZnF	ZFWD1	zinc finger WD40 repeat protei...		Lus10021640 [exp]	26.5	0.7158
AT2G46550			unknown protein		Lus10023163 [exp]	34.6	0.7311
AT5G07920		ATDGK1, DGK1	DIACYLGLYCEROL KINASE 1, diacy...		Lus10015742 [exp]	36.9	0.6570

Compare expression of checked genes

Lus10000086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.