Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02260 43 / 3e-05 CRM1, TIR3, LPR1, DOC1, ASA1, UMB1, BIG UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005090 [exp] 147 / 8e-42 AT3G02260 3659 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G101100 [exp] 89 / 2e-21 AT3G02260 6576 / 0.0 UMBRELLA 1, TRANSPORT INHIBITOR RESPONSE 3, LOW PHOSPHATE-RESISTANT ROOT 1, DARK OVER-EXPRESSION OF CAB 1, CORYMBOSA1, ATTENUATED SHADE AVOIDANCE 1, auxin transport protein (BIG) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000087 pacid=23166272 polypeptide=Lus10000087 locus=Lus10000087.g ID=Lus10000087.BGIv1.0 annot-version=v1.0 ATGGAAGACCACTTTACCAAGCTCCACCGATGTCTTTTCGAATCCAACACTTCGCCGACGGATTTCTTTCACTCTCTCCGCTCCGACGCTTCCATCTCCA TCGCCCTTCAGCAATTCTACTTAATTCTCAAGCGAGGAGTCTCCGTCGTCGACGCAGATGATGTTGATGATAAGAGATTAGGGTGCCAGTTGTGGACCGA TTCACAGATCCAAGCTGTTGTCTCATTCGGCCTCGCGATCGTTTCCGCTTCTAGGTCTCTTTCAGATCAGCCTATGCAAGAAATCATTTCTAGCACTATT TGTTTGTCTAAAATGTCATCCTTGAGTTCAAAACTGATGACTGGACAGCCACGGATGGCGATCAAGGTAGTCAACTACTCCATCGCCTTTTATCGGCGGG TGGTGAGGTGA
AA sequence Show only first row Show all	>Lus10000087 pacid=23166272 polypeptide=Lus10000087 locus=Lus10000087.g ID=Lus10000087.BGIv1.0 annot-version=v1.0 MEDHFTKLHRCLFESNTSPTDFFHSLRSDASISIALQQFYLILKRGVSVVDADDVDDKRLGCQLWTDSQIQAVVSFGLAIVSASRSLSDQPMQEIISSTI CLSKMSSLSSKLMTGQPRMAIKVVNYSIAFYRRVVR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10000087 [exp]	0	1
AT3G12440			Polynucleotidyl transferase, r...		Lus10000103 [exp]	1.4	0.9828
AT5G24740			Protein of unknown function (D...		Lus10003835 [exp]	1.7	0.9831
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10034360 [exp]	3.5	0.9810
AT1G02080			transcription regulators (.1.2...		Lus10042877 [exp]	3.5	0.9827
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10024283 [exp]	4.5	0.9791
AT3G02260		CRM1, TIR3, LPR...	UMBRELLA 1, TRANSPORT INHIBITO...		Lus10005090 [exp]	4.7	0.9697
AT5G27970			ARM repeat superfamily protein...		Lus10004117 [exp]	5.2	0.9744
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	5.5	0.9777
ATMG00080		ATMG00080.1, RP...	ribosomal protein L16 (.1)		Lus10004083 [exp]	6.5	0.9772
AT2G46520			cellular apoptosis susceptibil...		Lus10005969 [exp]	7.3	0.9610

Compare expression of checked genes

Lus10000087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.