Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56170 127 / 3e-38 LLG1 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) AT2G20700 121 / 2e-36 LLG2 LORELEI-LIKE-GPI ANCHORED PROTEIN 2 (.1) AT4G28280 120 / 5e-36 LLG3 LORELEI-LIKE-GPI ANCHORED PROTEIN 3 (.1.2) AT4G26466 104 / 2e-29 LRE lorelei (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000404 [exp] 152 / 2e-48 AT5G56170 180 / 2e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10027120 [exp] 152 / 3e-48 AT5G56170 179 / 3e-58 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033694 [exp] 97 / 6e-27 AT5G56170 140 / 2e-43 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10000405 [exp] 96 / 4e-26 AT5G56170 149 / 1e-46 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10033695 [exp] 93 / 4e-25 AT5G56170 135 / 2e-41 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10010587 [exp] 87 / 1e-22 AT5G56170 99 / 2e-26 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031643 [exp] 72 / 7e-17 AT5G56170 98 / 2e-28 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Lus10031642 [exp] 68 / 2e-15 AT4G26466 84 / 2e-21 lorelei (.1) Lus10039822 [exp] 63 / 1e-13 AT4G26466 79 / 3e-19 lorelei (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471500 [exp] 135 / 1e-41 AT5G56170 183 / 8e-60 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.011G168500 [exp] 128 / 9e-39 AT5G56170 171 / 9e-55 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.019G095200 [exp] 119 / 3e-35 AT5G56170 153 / 7e-48 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1) Potri.013G132000 [exp] 115 / 9e-34 AT5G56170 159 / 2e-50 LORELEI-LIKE-GPI-ANCHORED PROTEIN 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000089 pacid=23166284 polypeptide=Lus10000089 locus=Lus10000089.g ID=Lus10000089.BGIv1.0 annot-version=v1.0 ATGGACTTCCAGTTCATGAACTACATAGGCAGCACAAGCCAGTGCAAAGGACTAAGTTATCCTGTGAAGGAGTGTTGCTCGTCGCTCAAGGAATTTGCCT GTCCTTTTGCAGAAATGTTAAACGATTTGACGAACGACTGTGCATCAACCATGTTTAGCTACATTAATCTCTACGGGAAGTACCCTCCTGCTGTTTTCAC CACCCACTACAATAATGGAAAGGAAGGTCTTGATTGTCCCGTAGCTTCGCCTTCCCAATCAGCTAATGACAGTGGAAGTCAGGGTCTAAGTACTCGAGAA GTACTGCTAGTATTCTCAGCTGGATTCCTAGTGATGTTGCTTCAGGAACCTAGTTGGTCTGTTTGA
AA sequence Show only first row Show all	>Lus10000089 pacid=23166284 polypeptide=Lus10000089 locus=Lus10000089.g ID=Lus10000089.BGIv1.0 annot-version=v1.0 MDFQFMNYIGSTSQCKGLSYPVKECCSSLKEFACPFAEMLNDLTNDCASTMFSYINLYGKYPPAVFTTHYNNGKEGLDCPVASPSQSANDSGSQGLSTRE VLLVFSAGFLVMLLQEPSWSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10000089 [exp]	0	1
AT5G27600		LACS7, ATLACS7	long-chain acyl-CoA synthetase...		Lus10029918 [exp]	11.7	0.8948
AT1G05560		UGT75B1, UGT1	UDP-GLUCOSE TRANSFERASE 1, UDP...		Lus10021610 [exp]	11.7	0.8915
AT1G32170		XTH30, XTR4	xyloglucan endotransglycosylas...		Lus10012115 [exp]	19.2	0.8764
AT4G21790		ATTOM1, TOM1	tobamovirus multiplication 1 (...		Lus10007663 [exp]	20.3	0.8770
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10009398 [exp]	24.2	0.8686
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10002663 [exp]	24.7	0.8741
AT3G50120			Plant protein of unknown funct...		Lus10010064 [exp]	26.5	0.8754
AT2G18250		ATCOAD	4-phosphopantetheine adenylylt...		Lus10026004 [exp]	31.4	0.8687
AT5G03700			D-mannose binding lectin prote...		Lus10023868 [exp]	43.2	0.8693
AT3G10120			unknown protein		Lus10027167 [exp]	44.6	0.8642

Compare expression of checked genes

Lus10000089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.