Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 163 / 2e-49 Protein of unknown function (DUF1624) AT5G27730 153 / 4e-44 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019798 [exp] 288 / 4e-97 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10039223 [exp] 223 / 1e-71 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10027468 [exp] 202 / 3e-63 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10014112 [exp] 165 / 4e-49 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10010030 [exp] 162 / 2e-47 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10020653 [exp] 143 / 3e-40 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10036333 [exp] 130 / 7e-37 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10021514 [exp] 128 / 2e-34 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 128 / 2e-34 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G136700 [exp] 228 / 3e-73 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 222 / 5e-71 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 162 / 8e-48 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.014G123800 [exp] 155 / 7e-45 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 142 / 6e-40 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.013G016900 [exp] 132 / 3e-36 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.006G122500 [exp] 131 / 1e-35 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 124 / 4e-33 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000090 pacid=23175339 polypeptide=Lus10000090 locus=Lus10000090.g ID=Lus10000090.BGIv1.0 annot-version=v1.0 ATGCGGCAAACGGAGGCAATCTCCATAGCTTTACCACCAATCACAACGTGCCACCTGATGATGGTGGTTGATTATGGGGGTTCAGTTTTCCCAATCATTG CTCATTCGCCGTGGAACGGCCTTCACTTGGCGGATTTCGTGATGCCTTTCTTCCTTTTCGTCGTTGGCGTATCCATTGCGCTTGTCTACAAGAAAGCACC AAACAAAACAGAAGCCACATGGAAGGCTGCGGGTAGAGCGGCTAAGTTATTCTTGTTGGGTGTTCTTCTACAAGGTGGGTTTCTTCACGGGTTAAATTCA CTAACCTATGGCGTTGACATGGAAAAGATACGTTTGCTAGGAATTTTGCAGAGAATATCGATTGGTTACTTTGTTGGGGCTGTTTGTGAGATTTGGCTTT CGCGTAGAACAAGGAGAGAGATTGGGATTTTGAAGAGCTATTACTGGCACTGGGTTGCTGCATTTGCACTTATTGCTGTGTATCTCGGGTTACTATATGG TATATATGTTCCGGACTGGCAGTTTGTACATGATGCCAATGTATATTCGGTGAGAGCTTGGTCAAACCCCCTTGATGAAGTTGATTCGAATCAGCAATTG GAACGAATTTTGTGTTCTGATATATTACCTGTATCGTGA
AA sequence Show only first row Show all	>Lus10000090 pacid=23175339 polypeptide=Lus10000090 locus=Lus10000090.g ID=Lus10000090.BGIv1.0 annot-version=v1.0 MRQTEAISIALPPITTCHLMMVVDYGGSVFPIIAHSPWNGLHLADFVMPFFLFVVGVSIALVYKKAPNKTEATWKAAGRAAKLFLLGVLLQGGFLHGLNS LTYGVDMEKIRLLGILQRISIGYFVGAVCEIWLSRRTRREIGILKSYYWHWVAAFALIAVYLGLLYGIYVPDWQFVHDANVYSVRAWSNPLDEVDSNQQL ERILCSDILPVS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G47900			Protein of unknown function (D...		Lus10000090 [exp]	0	1
AT5G47900			Protein of unknown function (D...		Lus10014112 [exp]	1.0	0.9564
AT2G26100			Galactosyltransferase family p...		Lus10014451 [exp]	3.5	0.8923
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028401 [exp]	4.9	0.8833
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10025955 [exp]	5.5	0.8678
AT1G10760		GWD1, GWD, SOP1...	STARCH EXCESS 1, Pyruvate phos...		Lus10013044 [exp]	6.7	0.8789
AT1G04120		ATABCC5, ABCC5,...	MULTIDRUG RESISTANCE PROTEIN 5...		Lus10024965 [exp]	8.2	0.8830
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10034005 [exp]	13.0	0.8707
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10028402 [exp]	13.2	0.8714
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Lus10012770 [exp]	13.4	0.8697
AT1G06475			unknown protein		Lus10007328 [exp]	13.6	0.8119

Compare expression of checked genes

Lus10000090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.