Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21705 426 / 6e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G60770 221 / 2e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 218 / 5e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 201 / 1e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G02370 193 / 5e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 191 / 2e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 182 / 3e-52 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02820 176 / 1e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G28020 164 / 1e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 129 / 3e-33 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005855 [exp] 851 / 0 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001213 [exp] 798 / 0 AT4G21705 500 / 2e-174 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003590 [exp] 370 / 1e-124 AT4G21705 434 / 2e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013047 [exp] 229 / 2e-70 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 210 / 2e-62 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033698 [exp] 208 / 5e-62 AT2G20710 349 / 4e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004173 [exp] 193 / 4e-57 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022033 [exp] 189 / 1e-55 AT4G02820 468 / 9e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042574 [exp] 191 / 4e-55 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G042500 [exp] 506 / 2e-178 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 489 / 1e-171 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 432 / 5e-149 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132500 [exp] 238 / 5e-74 AT2G20710 388 / 4e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G063300 [exp] 234 / 7e-72 AT2G20710 345 / 1e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.006G157400 [exp] 229 / 4e-70 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G132700 [exp] 229 / 6e-70 AT2G20710 387 / 2e-130 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G079600 [exp] 227 / 2e-69 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G063400 [exp] 227 / 4e-69 AT2G20710 349 / 3e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G133000 [exp] 213 / 3e-64 AT2G20710 310 / 1e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10000091 pacid=23157122 polypeptide=Lus10000091 locus=Lus10000091.g ID=Lus10000091.BGIv1.0 annot-version=v1.0 ATGAGTAAATCGGGGACTGTAGTATGCTCGCCAGCTGAACATGCGATCCGGATCGATCTGATAGGGAAGGTTAAGGGATTCGAGTCTGCGGAGGATTATT TCAACAGTCTTAGGGACATTGATAAAACTCACAAGACCTATGGAGCTCTGCTCAATTGCTACGTTCGTCAGAAGCAGATGGATAAGTCGATTTCCCACAT GCAGAAAATGAAGGAACTTGGGTTTGCTTCGTCACCCATCGCTTACAACAACATTATGTGTCTATACACTAATCTCGGCCAGCATGAGAAGGTACCTTCC GTGTTAGCCGAGATGAAGGCTAGCAATGTCTCCCCGGACAACTACAGCTACAGGATCTGCATCACATCTTACGGTGTAAGATCCGAAATCGAGGAAATGG ACAAGATTCTGCATGAGATGGAACAGCAATCCGACATAGTGATGGATTGGAATACTTACACCGTAGTTGCCAACTTCTACATCAAAGCCGGTCTTCGTGA GAAAGCTATGGAAGCTTTGAAGAATGCGGAGGAGGTACTCGAATGGAAAGACGGTACCGGGTTTAACCATCTGATATCACTGAATGCAGCTCTGGGGAAT GTCGATGAAGTATTGAGATTGTGGAAACTGGAGAAAGCTCGATGTAAAAGGTGCATCAACAAAGATTACATCGTTGTCTTGGAATCGCTGATGAAGCTCA AGGAGGTGGGCCATGCCGAGAAGGTCTTGAAGGAATGGGAATCAAGTGGGAACTGTCACGATTTCAGCGTTCCGAATGTGGTGGTGATCGGGTATGTCCA GCAAGGGATTCTGGAGAAAGCCGAGGCTCTGGTTCGAGAGTCCATGAAGAAAGGGATGGCTGTGACTCCAAACAGTTTGGCCACGGTTGCAAAGGGATAC CTTGATAGAGGTGATGAGATGAGGAAAGGGTGTGAATTGATGCAGGCTGCCCTTGTTCGGTGCGTTGCAAACAAAGGATGGAAGCCGAATCCCAGGGTGA TAACCGACATCCTGAATTGGCTTGGCGATGAAGGCACGGTCGAGGAAGCGAAAGCCTTCGTTGAGGCGATGAAGACTATTGTTCCATCGAGCAGGGGAAT GTATCATGCCATTTTGAAGGCTTGCAGAAGGAATGGTGCAGAAGTCGAAACGATCTTGCGAGCTATGGATGCCGATGGGATTGATCAAAATGAACGAACC CAGAAGATCCTTGGGAAGAAACTCGATTGA
AA sequence Show only first row Show all	>Lus10000091 pacid=23157122 polypeptide=Lus10000091 locus=Lus10000091.g ID=Lus10000091.BGIv1.0 annot-version=v1.0 MSKSGTVVCSPAEHAIRIDLIGKVKGFESAEDYFNSLRDIDKTHKTYGALLNCYVRQKQMDKSISHMQKMKELGFASSPIAYNNIMCLYTNLGQHEKVPS VLAEMKASNVSPDNYSYRICITSYGVRSEIEEMDKILHEMEQQSDIVMDWNTYTVVANFYIKAGLREKAMEALKNAEEVLEWKDGTGFNHLISLNAALGN VDEVLRLWKLEKARCKRCINKDYIVVLESLMKLKEVGHAEKVLKEWESSGNCHDFSVPNVVVIGYVQQGILEKAEALVRESMKKGMAVTPNSLATVAKGY LDRGDEMRKGCELMQAALVRCVANKGWKPNPRVITDILNWLGDEGTVEEAKAFVEAMKTIVPSSRGMYHAILKACRRNGAEVETILRAMDADGIDQNERT QKILGKKLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	0	1
AT2G31240			Tetratricopeptide repeat (TPR)...		Lus10003563 [exp]	1.0	0.9040
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	2.8	0.8543
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	3.0	0.8582
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	3.2	0.8606
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10031661 [exp]	3.2	0.8521
AT1G69530		ATHEXPALPHA1.2,...	EXPANSIN 1, expansin A1 (.1.2....		Lus10030449 [exp]	4.7	0.8176
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	4.9	0.8445
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	5.1	0.8332
AT1G43980			Tetratricopeptide repeat (TPR)...		Lus10028647 [exp]	5.9	0.8501
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	6.3	0.8418

Compare expression of checked genes

Lus10000091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.