Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36945 188 / 3e-58 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 178 / 3e-54 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 168 / 3e-51 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 155 / 1e-45 PLC-like phosphodiesterases superfamily protein (.1) AT1G13680 147 / 6e-43 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019339 [exp] 293 / 1e-98 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10041594 [exp] 182 / 1e-59 AT1G49740 122 / 1e-34 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 179 / 1e-54 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 179 / 2e-54 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10012600 [exp] 162 / 2e-48 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 158 / 6e-47 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 155 / 2e-46 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 155 / 2e-45 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 141 / 2e-40 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G139400 [exp] 244 / 4e-80 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 237 / 3e-77 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 205 / 7e-65 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.017G098900 [exp] 160 / 4e-48 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.011G144900 [exp] 157 / 1e-46 AT1G13680 462 / 2e-163 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 157 / 2e-46 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 154 / 3e-45 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 150 / 2e-43 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 55 / 3e-09 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000092 pacid=23174295 polypeptide=Lus10000092 locus=Lus10000092.g ID=Lus10000092.BGIv1.0 annot-version=v1.0 ATGGTGAAAAAGAATCAACGGCTTTTGGTCTTCTCCTCCAAAGCCGAGAAAGAGGCTTCTGAAGGGTTTGCATATACATGGAGATATGTATTGGAAACTC AGTATGGAGACGACGGGATGAAACCTGATTCATGCAAGAACCGAAACGAATCACCTCCTCTCAACATAACTACGATATCGTTGATTCTAGAAAACTTCTT CCCAACTAATCCAAACAACTCTCGAGTCTGCATGGAGAACTCACTTCCACTGCAAGAAGCAACTAAATCATGTGCTAAGGCAGCTGGGAACCGGTGGGCG AACTTCATTGCTGTCGATTTCTATCAGAGAAGTGATGGTGGTGGAGCCCCAGAAGCAGTGAATGAAGCGAATGGTCACCTCACCTGTGGGTGTCCAAATA TTGCCTACTGCAAGTTCAATGCTACATTTGGGACATGTGATGTACCACAACTAGCCCCACCTCCACCTGCTGCTGGAGGAGAACAAACTTTGTTTGGTCC TGACAGTGCTTACTCTGAAAGAAGCCAAATCCAACTAGGATGGCTGCTGGGAACATTTTTTATCATCAAACTGCTCTTACATTTCTGA
AA sequence Show only first row Show all	>Lus10000092 pacid=23174295 polypeptide=Lus10000092 locus=Lus10000092.g ID=Lus10000092.BGIv1.0 annot-version=v1.0 MVKKNQRLLVFSSKAEKEASEGFAYTWRYVLETQYGDDGMKPDSCKNRNESPPLNITTISLILENFFPTNPNNSRVCMENSLPLQEATKSCAKAAGNRWA NFIAVDFYQRSDGGGAPEAVNEANGHLTCGCPNIAYCKFNATFGTCDVPQLAPPPPAAGGEQTLFGPDSAYSERSQIQLGWLLGTFFIIKLLLHF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G36945			PLC-like phosphodiesterases su...		Lus10000092 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	1.4	0.9490
AT5G53330			Ubiquitin-associated/translati...		Lus10038829 [exp]	2.0	0.9339
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	4.0	0.8929
AT2G31390		STH	pfkB-like carbohydrate kinase ...		Lus10009526 [exp]	4.6	0.9244
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Lus10038122 [exp]	5.9	0.9210
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	6.0	0.9205
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	6.7	0.9066
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	9.5	0.8848
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	11.5	0.8979
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032388 [exp]	13.0	0.8922

Compare expression of checked genes

Lus10000092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.