Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37660 114 / 9e-33 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G06040 87 / 9e-22 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) AT1G70190 86 / 3e-21 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) AT4G36420 77 / 4e-18 Ribosomal protein L12 family protein (.1) AT2G03130 52 / 5e-09 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) AT3G27850 48 / 5e-07 RPL12-C ribosomal protein L12-C (.1) AT3G27830 48 / 6e-07 RPL12-A ribosomal protein L12-A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023839 [exp] 234 / 2e-79 AT4G37660 155 / 1e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10021011 [exp] 227 / 1e-76 AT4G37660 157 / 3e-49 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Lus10041783 [exp] 92 / 9e-24 AT4G36420 174 / 5e-56 Ribosomal protein L12 family protein (.1) Lus10028336 [exp] 92 / 1e-23 AT4G36420 176 / 1e-56 Ribosomal protein L12 family protein (.1) Lus10036228 [exp] 91 / 9e-23 AT1G70190 238 / 3e-80 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10038367 [exp] 91 / 1e-22 AT1G70190 243 / 3e-82 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Lus10031756 [exp] 85 / 1e-20 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10031180 [exp] 84 / 1e-20 AT3G06040 202 / 2e-66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Lus10013078 [exp] 52 / 3e-08 AT3G27830 175 / 7e-56 ribosomal protein L12-A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224300 [exp] 140 / 1e-42 AT4G37660 154 / 4e-48 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1) Potri.015G077200 [exp] 91 / 4e-23 AT3G06040 132 / 3e-39 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein (.1.2.3) Potri.007G019100 [exp] 87 / 2e-21 AT4G36420 127 / 2e-37 Ribosomal protein L12 family protein (.1) Potri.003G074800 [exp] 86 / 7e-21 AT1G70190 204 / 1e-66 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (.1.2) Potri.001G346100 [exp] 46 / 2e-06 AT3G27830 146 / 1e-44 ribosomal protein L12-A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00542 [flax] [poplar] Ribosomal_L12 Ribosomal protein L7/L12 C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10000093 pacid=23172722 polypeptide=Lus10000093 locus=Lus10000093.g ID=Lus10000093.BGIv1.0 annot-version=v1.0 ATGGCTGCAATCTCCTCAAAATTGCCTCCTAAATCCCTGACAAACCTCTTGAATTTGGGCCGAATCTCCCGCCACCTATCCGCCACCGCCAGTTCCGCAG CTCCCTCCTCCGACGCCCGGATTCAGAAGCTCGAACGCATCGCCGATGAACTCATCGACCTCACTAAGCTCGAGCGCTACGATTACTCCATCCTCTTCCG CTTCAAAATGGGCCTCAACCGCTACGGCCCTGCTATTTCCGGAACCATATCCTCAGGTCCCGGCGCCGCAGCCGCCGGATCCAGCGGCGCAGATGCCAAG CCCGCGGAGAAGACGGCGTTCAACATCAAGCTGGAGAAGTACGACGCTGCGGCGAAGATCAAGATTATAAAGGAAGTTAGATCGTTTACCGATTTGGGGC TGAAGGAGGCCAAGGATTTGGTGGAGAAAGTGCCTGCGGTTCTGAAGAAAGGGATTACTAAAGAGGAGGCAACTCCCATTCTTGAGAAGCTCAAGGAATT GGGAGCTACTGTGGTATTGGAATGA
AA sequence Show only first row Show all	>Lus10000093 pacid=23172722 polypeptide=Lus10000093 locus=Lus10000093.g ID=Lus10000093.BGIv1.0 annot-version=v1.0 MAAISSKLPPKSLTNLLNLGRISRHLSATASSAAPSSDARIQKLERIADELIDLTKLERYDYSILFRFKMGLNRYGPAISGTISSGPGAAAAGSSGADAK PAEKTAFNIKLEKYDAAAKIKIIKEVRSFTDLGLKEAKDLVEKVPAVLKKGITKEEATPILEKLKELGATVVLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10000093 [exp]	0	1
AT4G37660			Ribosomal protein L12/ ATP-dep...		Lus10023839 [exp]	1.0	0.9598
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Lus10039064 [exp]	4.0	0.8756
AT3G25580			Thioredoxin superfamily protei...		Lus10013889 [exp]	8.9	0.8373
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	9.0	0.8476
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10022446 [exp]	10.2	0.8194
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	10.4	0.8277
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10010025 [exp]	13.8	0.8161
AT1G26761			Arabinanase/levansucrase/inver...		Lus10037153 [exp]	14.1	0.8318
AT3G52750		FTSZ2-2	Tubulin/FtsZ family protein (....		Lus10014196 [exp]	15.1	0.8104
AT4G29240			Leucine-rich repeat (LRR) fami...		Lus10012929 [exp]	16.7	0.8035

Compare expression of checked genes

Lus10000093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.