Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17210 162 / 7e-53 ATHS1 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) AT5G22580 73 / 7e-18 Stress responsive A/B Barrel Domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037823 [exp] 210 / 4e-72 AT3G17210 170 / 1e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Lus10017101 [exp] 87 / 2e-21 AT5G30490 189 / 2e-59 unknown protein Lus10020555 [exp] 58 / 6e-12 AT5G22580 133 / 9e-42 Stress responsive A/B Barrel Domain (.1) Lus10009407 [exp] 55 / 1e-10 AT5G22580 122 / 2e-37 Stress responsive A/B Barrel Domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037500 [exp] 162 / 4e-53 AT3G17210 170 / 2e-56 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G037200 [exp] 162 / 4e-52 AT3G17210 169 / 4e-55 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150900 [exp] 133 / 1e-41 AT3G17210 146 / 8e-47 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151000 [exp] 127 / 2e-39 AT3G17210 134 / 3e-42 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150500 [exp] 89 / 4e-24 AT3G17210 100 / 5e-29 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G151200 [exp] 86 / 8e-23 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.010G150800 [exp] 85 / 1e-22 AT3G17210 92 / 1e-25 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.004G187500 [exp] 67 / 1e-15 AT5G22580 134 / 3e-42 Stress responsive A/B Barrel Domain (.1) Potri.010G150700 [exp] 67 / 2e-15 AT3G17210 86 / 4e-23 A. THALIANA HEAT STABLE PROTEIN 1, heat stable protein 1 (.1) Potri.009G148100 [exp] 65 / 1e-14 AT5G22580 118 / 7e-36 Stress responsive A/B Barrel Domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0032 [flax] [poplar] Dim_A_B_barrel PF07876 [flax] [poplar] Dabb Stress responsive A/B Barrel Domain
Representative CDS sequence Show only first row Show all	>Lus10000094 pacid=23175335 polypeptide=Lus10000094 locus=Lus10000094.g ID=Lus10000094.BGIv1.0 annot-version=v1.0 ATGGAAGAAGGGAAAGGAGAAGTGAAGCACGTCCTGCTCGCGAAATTCAAACCAGAGATTTCAGGAGAGGAGATCGAAAAGCTCATCAAGGATTACGCCA ATCTCGTCACTCTCATCGAACCTATGAAGGCTTTCCACTGGTTCATCCTCGAATCCTCCCTTGTTTCTTTTCTTTGGGGAACGGATGTGAGCATCGAGAA TATGCACCAGGGATTCACTCACATATTCGTCTCCACCTTCGAGAGCACTGAAGGGATCGCTGAGTATGTAGCTCATCCTGTTCACGTAGAGTTCGCCAAT TTGTTCTTGGCTGCCCTTGACAAAGTACTGGTTTTCGATTACAAGCCCACCTCCGTTAAGTGA
AA sequence Show only first row Show all	>Lus10000094 pacid=23175335 polypeptide=Lus10000094 locus=Lus10000094.g ID=Lus10000094.BGIv1.0 annot-version=v1.0 MEEGKGEVKHVLLAKFKPEISGEEIEKLIKDYANLVTLIEPMKAFHWFILESSLVSFLWGTDVSIENMHQGFTHIFVSTFESTEGIAEYVAHPVHVEFAN LFLAALDKVLVFDYKPTSVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Lus10000094 [exp]	0	1
AT2G33220			GRIM-19 protein (.1)		Lus10023693 [exp]	17.0	0.7313
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10013785 [exp]	20.1	0.6790
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10036786 [exp]	23.1	0.7220
AT1G31817		NFD3	NUCLEAR FUSION DEFECTIVE 3, Ri...		Lus10007591 [exp]	40.4	0.6815
AT4G26210			Mitochondrial ATP synthase sub...		Lus10040553 [exp]	43.1	0.6444
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10035500 [exp]	54.8	0.6700
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10019939 [exp]	56.6	0.5981
AT5G46850			unknown protein		Lus10040093 [exp]	58.4	0.6035
AT2G30942			Protein of unknown function (D...		Lus10007167 [exp]	70.4	0.6572
AT3G58730			vacuolar ATP synthase subunit ...		Lus10027271 [exp]	84.5	0.6158

Compare expression of checked genes

Lus10000094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.