Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02080 220 / 5e-75 Ribosomal protein S19e family protein (.1) AT5G61170 217 / 1e-73 Ribosomal protein S19e family protein (.1) AT5G15520 214 / 1e-72 Ribosomal protein S19e family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010339 [exp] 313 / 9e-112 AT3G02080 219 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10013188 [exp] 239 / 3e-82 AT3G02080 259 / 2e-90 Ribosomal protein S19e family protein (.1) Lus10021865 [exp] 237 / 5e-82 AT3G02080 216 / 7e-74 Ribosomal protein S19e family protein (.1) Lus10030702 [exp] 235 / 4e-81 AT3G02080 215 / 2e-73 Ribosomal protein S19e family protein (.1) Lus10032992 [exp] 234 / 6e-81 AT3G02080 218 / 1e-74 Ribosomal protein S19e family protein (.1) Lus10033532 [exp] 230 / 7e-79 AT3G02080 258 / 3e-90 Ribosomal protein S19e family protein (.1) Lus10020836 [exp] 229 / 2e-78 AT3G02080 258 / 5e-90 Ribosomal protein S19e family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056100 [exp] 217 / 9e-74 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1) Potri.004G118800 [exp] 216 / 3e-73 AT5G61170 269 / 2e-94 Ribosomal protein S19e family protein (.1) Potri.017G092200 [exp] 214 / 1e-72 AT5G61170 270 / 5e-95 Ribosomal protein S19e family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF01090 [flax] [poplar] Ribosomal_S19e Ribosomal protein S19e
Representative CDS sequence Show only first row Show all	>Lus10000095 pacid=23161920 polypeptide=Lus10000095 locus=Lus10000095.g ID=Lus10000095.BGIv1.0 annot-version=v1.0 ATGGATTCGCTTTCGGACAAGGTCAGATTCCGGACTTGGGTTTGCACCAAATGGGATCCGCGATCTAAGCCCAGCATTGTTGTAGCCGGACCGGGCAAGG AAAACATAAAGATAGAGCTTCCCCCATGGACTGATATTGTGAAGACTGGGAAGTTGAAGGAGCTTGCACCTTACGACCCTGACTGGTATTACATCAGAGC TGCCTCAATGGCGAGAAAGGTATACCTTAGAGGCGGCCTTGGTGTTGGTGCATTCCGGAGAATTTATGGCGGGAGCAAAAGGAATGGAAGCCGCCCGCCC CATTTCTGCAAAAGCAGTGGTGCTGTCGCCCGTCACATTCTTCAACAATTGGAGAAGGTTAACATCGTTGAAGTTGATACCAACGGTGGAAGGAAGATTA CTTCAAATGGCCAGAGGGATTTGGATCAAGTTGCTGGACGGGTTATTGTTGTTGCTCCTTGA
AA sequence Show only first row Show all	>Lus10000095 pacid=23161920 polypeptide=Lus10000095 locus=Lus10000095.g ID=Lus10000095.BGIv1.0 annot-version=v1.0 MDSLSDKVRFRTWVCTKWDPRSKPSIVVAGPGKENIKIELPPWTDIVKTGKLKELAPYDPDWYYIRAASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPP HFCKSSGAVARHILQQLEKVNIVEVDTNGGRKITSNGQRDLDQVAGRVIVVAP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02080			Ribosomal protein S19e family ...		Lus10000095 [exp]	0	1
AT3G02080			Ribosomal protein S19e family ...		Lus10010339 [exp]	1.4	0.9148
AT4G25740			RNA binding Plectin/S10 domain...		Lus10027519 [exp]	2.0	0.8856
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10009479 [exp]	5.5	0.8407
AT3G02080			Ribosomal protein S19e family ...		Lus10021865 [exp]	12.0	0.8735
AT5G39850			Ribosomal protein S4 (.1)		Lus10042193 [exp]	14.5	0.8277
AT3G13580			Ribosomal protein L30/L7 famil...		Lus10021296 [exp]	15.7	0.8303
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031974 [exp]	20.1	0.8176
AT5G27850			Ribosomal protein L18e/L15 sup...		Lus10041264 [exp]	22.1	0.8692
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	22.4	0.7721
AT4G14320			Zinc-binding ribosomal protein...		Lus10017396 [exp]	26.4	0.8520

Compare expression of checked genes

Lus10000095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.