Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63090 561 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 201 / 3e-60 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 180 / 4e-52 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 181 / 1e-51 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 177 / 4e-51 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 157 / 2e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 145 / 3e-39 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 142 / 4e-38 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 140 / 6e-37 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 135 / 8e-36 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000098 [exp] 750 / 0 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012374 [exp] 679 / 0 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028011 [exp] 388 / 3e-136 AT3G63090 261 / 6e-87 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028012 [exp] 306 / 2e-104 AT3G63090 234 / 7e-77 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 202 / 1e-60 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 199 / 3e-59 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10015979 [exp] 167 / 6e-47 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10000847 [exp] 159 / 1e-44 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005945 [exp] 160 / 1e-43 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220000 [exp] 582 / 0 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 210 / 1e-63 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G169300 [exp] 169 / 3e-47 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 169 / 3e-47 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 167 / 5e-47 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 159 / 2e-44 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 155 / 2e-42 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 142 / 3e-38 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 146 / 4e-38 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.015G141700 [exp] 137 / 8e-36 AT4G33495 607 / 0.0 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10000096 pacid=23139517 polypeptide=Lus10000096 locus=Lus10000096.g ID=Lus10000096.BGIv1.0 annot-version=v1.0 ATGCTATTCCAATCACGACCCATTGTCAATTTCGTTCGCGATTCGCTCGTGAACCCTAGATTGGGTATCCAAATCAAGCACATTTCCAGCCTGAAGGTCG TATGGCGGAAGGATCCGAAGCTAGACGAAGCTATCGAGCGAGACAAGAGGTACAAGCTCTGCGCTCGCGTCGTCAGGGAGGTGTTGCACGAACCTGGTCA GGTAATCTGCTTATCTTACCTTGATAAAAGGCGTCAGAGGTTGCGTCTCATGGACAAGATCAAAACTTTCCTCCGTCGGAACCCGTTACTGTTCGATACT TACTACGATCGGGTGAAACCTAAATCGGAACCCGTCCCGTTCGTTCGACCCAGTGATAGGCTGAGGGCGTTTTTGGAAGAGGAGAATAGGATACAGCTTG AGAACGAAGGGTTGGTAGTTTCGAAGCTGTGTAAGTTGTTGATGATGGCGAAGGATAAGGTGATCAGCGCTGATAAGTTGGTTCATGTTAAAAGGGAATT CGGGTTTCCTGATGATTTTATGGTTAGTTTGGTTCCGAAGTATCCGAATTACTTCAGGCTGGTTGGGTTTCCAGGAGAAGGGAAGTCGTTTCTGGAGCTT GTGGATTGGAACCCTGAGTTTGCCAAATCAGTCATTGAGCGAAGAGCAGGAGAGGAGTCTAGGTCAATAGGGGTTAGTGTTCGTCCTAATTTTGATTACA AGCTTCCACCGGGGTTTATCCTGAGGAAGGAGATGAGGGAGTGGGTTAGGGATTGGTTGGAACTCGAGTACGTATCGCCTTATGTCGATGTATCACCTTT GGATCAATCTTCACCCGAAATGGAGAAAAGATCCGTGGCAGTTTTCCACGAGCTGCTATCGCTCTCGCTGTTGAAGAGGGTTCCGGTGGCGATTCTAGGG AAGTTCTGTGAAGAGTATAGGTTTTCGAATGCGTTCTCTAGCGTTTTCACCAGGCATTCTGGTATATTTTACATGTCGTTGAAAGGTGGCATCAAGACTG CGATGCTAAGAGAAGCGTATAAGGGTAGCGAACTGATTGATAGGGACCCGTTGCTCGAGATAAAAGATAAGTTCACGGAGTTGTTGGAAGAAGGATGGCA GGATAGAGCTGAGGAGTTGAGGGTACAAAGAGAAGCCGTTAAGAAGGATCCGGAAATGATGATGATGATGCTATGTAAGGACTTAGATGGTGAAGAAAGT TGTAAGGAGGAGTCCAATGGTGAAGAACTGGATGAAAGTTTGTGA
AA sequence Show only first row Show all	>Lus10000096 pacid=23139517 polypeptide=Lus10000096 locus=Lus10000096.g ID=Lus10000096.BGIv1.0 annot-version=v1.0 MLFQSRPIVNFVRDSLVNPRLGIQIKHISSLKVVWRKDPKLDEAIERDKRYKLCARVVREVLHEPGQVICLSYLDKRRQRLRLMDKIKTFLRRNPLLFDT YYDRVKPKSEPVPFVRPSDRLRAFLEEENRIQLENEGLVVSKLCKLLMMAKDKVISADKLVHVKREFGFPDDFMVSLVPKYPNYFRLVGFPGEGKSFLEL VDWNPEFAKSVIERRAGEESRSIGVSVRPNFDYKLPPGFILRKEMREWVRDWLELEYVSPYVDVSPLDQSSPEMEKRSVAVFHELLSLSLLKRVPVAILG KFCEEYRFSNAFSSVFTRHSGIFYMSLKGGIKTAMLREAYKGSELIDRDPLLEIKDKFTELLEEGWQDRAEELRVQREAVKKDPEMMMMMLCKDLDGEES CKEESNGEELDESL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000096 [exp]	0	1
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000098 [exp]	1.0	0.7204
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	6.5	0.6827
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	15.0	0.6565
AT4G10620			P-loop containing nucleoside t...		Lus10000122 [exp]	22.0	0.6229
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007119 [exp]	30.0	0.6273
AT5G60590			DHBP synthase RibB-like alpha/...		Lus10037409 [exp]	47.6	0.5827
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	47.8	0.5854
AT1G01500			Erythronate-4-phosphate dehydr...		Lus10005124 [exp]	48.1	0.6007
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	56.6	0.5968
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10016907 [exp]	60.4	0.5845

Compare expression of checked genes

Lus10000096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.