Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63090 546 / 0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT2G31290 205 / 7e-62 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G48040 176 / 9e-51 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 172 / 2e-48 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 153 / 3e-42 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G21970 144 / 1e-38 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G79120 132 / 1e-34 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 131 / 1e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G33495 129 / 2e-33 RPD1 ROOT PRIMORDIUM DEFECTIVE 1, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 121 / 2e-30 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000096 [exp] 741 / 0 AT3G63090 561 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012374 [exp] 651 / 0 AT3G63090 503 / 8e-176 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028011 [exp] 372 / 7e-130 AT3G63090 261 / 6e-87 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10028012 [exp] 289 / 5e-98 AT3G63090 234 / 7e-77 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10003062 [exp] 205 / 2e-61 AT2G31290 558 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10034086 [exp] 201 / 5e-60 AT2G31290 559 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10005945 [exp] 164 / 3e-45 AT4G01037 582 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10029446 [exp] 164 / 4e-45 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10015979 [exp] 160 / 2e-44 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220000 [exp] 572 / 0 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.005G191100 [exp] 209 / 2e-63 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G169300 [exp] 171 / 8e-48 AT4G01037 586 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 167 / 1e-46 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 156 / 4e-43 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G230900 [exp] 154 / 1e-42 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G218100 [exp] 142 / 8e-38 AT5G21970 566 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 140 / 3e-36 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G245100 [exp] 129 / 1e-33 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.001G439100 [exp] 128 / 6e-33 AT1G79120 483 / 2e-170 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10000098 pacid=23159285 polypeptide=Lus10000098 locus=Lus10000098.g ID=Lus10000098.BGIv1.0 annot-version=v1.0 ATGCTATTCCAATCACGACCCATTGTCAATTTCGTTCGCGATTCGCTCGTGAACCCTAGATTGGGTATCCAAATCAAGCACATTTCCAGCCTCAAGGTCG TATGGCGGAAGGATCCGAAGCTAGACGAAGCGATCGAGCGAGACAAGAGGTACAAGCTATGCGCGCGCGTCGTCAGGGAGGTGCTGAACGAACCTGGTCA GGTAATCTGCTTATCCTATCTTGATAAAAGGCGTCAGAGGTTGCGTCTCATGGACAAGATCAAAACTTTCCTCCTTCGGAACCCGTTACTGTTCGATACT TACTACGATCGGGTGAAACCTAATTCGGAACTCGTCCCGTTCGTTCGCCCCAGCGGTAGGCTGAGAGCGTTTTTGGAAGAGGAGCAGAGAATACAGCTTG AGAACGAAGGGTTGGTAGTTTCGAAGCTGTGTAAGTTGTTGATGATGGCAAAAGATAAGGTGATCAGCGCTGATAAGTTGGTTCATGTTAAAAGGGAATT CGGGTTTCCTGATGATTTTATGGTTAGTTTGGTTCCGAAATATCCGAATTACTTCAGGCTGGTTGGGTTTCCAGGAGAAGGGAAGTCGTTTCTGGAGCTT GTGGATTGGAACCCTGAGTTTGCCAAATCTGTCATTGAGCGGAGAGCAGAAGAGGAGTCTAGGTCAATAGGGGTCAGTGTTCGTCCTAATTTTGATTGCA AGCTTCCACCGGGGTTTATCCTGAGGAAGGAGATGAGGGAGTGGGTTAGGGATTGGTTGGAACTCGAGTATGTATCGCCATACACGGATGTGTCACATTT GGATCAATCTTCGCCTGAAATGGAGAAAAGATCCGTGGGGGTTTTCCACGAGCTACTATCGCTCTCGCTGTTCAAGAGGGTTCCAGTGGCAATTCTAGGC AAGTTCTGTGAAGAGTATAGGTTTTCGAATGCATTCTCCAGCGTTTTCACCAGGCATTCTGGGATATTTTACATGTCGTTGAAAGGTGGCATCAAGAGTG CGATGCTAAGGGAAGCGTATAATGGTAGTGGATTGATTTATAGGGATCCTTTGCTCGAGATAAAAGATAAGTTCATGGAGTTGTTGGAAGAAGGATGGCA CGATAGAGCTGAGGAGTTAAGGGTACAAAGAGACGCTGTTAAGAAGGATCCGGAAATGATGATGGTGATGCAGTGTAAGGACTTAGATGGTGAAGAAAGC AGTATGGAGGAGCCCAAATGGGGAAGAACTGGATGA
AA sequence Show only first row Show all	>Lus10000098 pacid=23159285 polypeptide=Lus10000098 locus=Lus10000098.g ID=Lus10000098.BGIv1.0 annot-version=v1.0 MLFQSRPIVNFVRDSLVNPRLGIQIKHISSLKVVWRKDPKLDEAIERDKRYKLCARVVREVLNEPGQVICLSYLDKRRQRLRLMDKIKTFLLRNPLLFDT YYDRVKPNSELVPFVRPSGRLRAFLEEEQRIQLENEGLVVSKLCKLLMMAKDKVISADKLVHVKREFGFPDDFMVSLVPKYPNYFRLVGFPGEGKSFLEL VDWNPEFAKSVIERRAEEESRSIGVSVRPNFDCKLPPGFILRKEMREWVRDWLELEYVSPYTDVSHLDQSSPEMEKRSVGVFHELLSLSLFKRVPVAILG KFCEEYRFSNAFSSVFTRHSGIFYMSLKGGIKSAMLREAYNGSGLIYRDPLLEIKDKFMELLEEGWHDRAEELRVQRDAVKKDPEMMMVMQCKDLDGEES SMEEPKWGRTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000098 [exp]	0	1
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10000096 [exp]	1.0	0.7204
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038377 [exp]	12.2	0.6590
AT3G24860	Trihelix		Homeodomain-like superfamily p...		Lus10004091 [exp]	14.1	0.6403
AT5G52630		MEF1	mitochondrial RNAediting facto...		Lus10012206 [exp]	21.8	0.6461
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10036238 [exp]	25.5	0.6405
AT2G34930			disease resistance family prot...		Lus10002758 [exp]	43.0	0.6115
AT2G34930			disease resistance family prot...		Lus10000236 [exp]	52.6	0.6156
AT3G63090			Ubiquitin carboxyl-terminal hy...		Lus10012374 [exp]	61.0	0.6026
AT1G68260			Thioesterase superfamily prote...		Lus10031936 [exp]	81.5	0.5248
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Lus10022670 [exp]	85.7	0.6028

Compare expression of checked genes

Lus10000098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.