Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15060 283 / 3e-92 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) AT1G73750 117 / 3e-30 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034107 [exp] 446 / 2e-155 AT1G15060 774 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10043481 [exp] 427 / 1e-147 AT1G15060 762 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10013496 [exp] 122 / 2e-31 AT1G15060 423 / 2e-142 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Lus10007966 [exp] 108 / 5e-27 AT1G73750 224 / 9e-69 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G119700 [exp] 307 / 4e-101 AT1G15060 751 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.008G124400 [exp] 291 / 7e-95 AT1G15060 743 / 0.0 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1) Potri.012G053700 [exp] 169 / 5e-49 AT1G15060 505 / 4e-175 Uncharacterised conserved protein UCP031088, alpha/beta hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01738 [flax] [poplar] DLH Dienelactone hydrolase family
Representative CDS sequence Show only first row Show all	>Lus10000099 pacid=23149612 polypeptide=Lus10000099 locus=Lus10000099.g ID=Lus10000099.BGIv1.0 annot-version=v1.0 ATGTCTGGCCAAGGCTTTGACACATGGATTCTTGAAGTTCGAGGGGCCGGACTAAGTGTGTGGGAATCAGATTCCAAAAAAGTTGGGCAGTCTGCTTATG CAGCTGCTGAGCAGATGGAATCAGCTGCTAAGAGTGCGACTAATGGAGCTGTGTCTGGAAATCAGAAAACAGAAAGTTCTCAAAACATGTCTACGGAAAC TGAGGTTTCATCGGTCCCAGAGGATCCAACTGGACTAGCAACTGTGTGGGATGAATCGAAGTTGGTGTCAAATTTGACAGATACGTTCATGCGTTTGTCT GAAAGTCTCTCTGGTTTTCTTGGTGAAGGTCAATCCATGATTATGTCTGCGAAATTATTTGACCAGATATCTACACTTTTAGAAGATACCCAGTTATCCG AGCGTCTTAATGAGTTAAGGGAGAAGCTTCTGAGCTTGCTGGAGACGAGGCAAACTTCTGGTGTTACCAGTCAGATCAGAGATCTAAGTCAAAAGCTTGT AAATATTGTTGAGGAGGGGCAACGGTCTGTCTCCCCCCAGTTGTTTGATTTGCAAGAGCGTCTTGCATCAACTATAGAAGATTTTCAGAAACAACTTGAC TTGATTGTGAAGTATGACTGGGACTTTGACCATTACCTCGAGGAGGATGTTCCTACTGCGATGCAATATATAACAACACAATGCAAACCAAAGGATGGAA AGTTGCTTGCCATTGGACATTCCATGGGAGGCATCTTACTGTATGCAAGATTATCACGTTGTGGTAAGATGCATCTATTTGCATCAATCAAACAAGTGCC TCCCTTTTAG
AA sequence Show only first row Show all	>Lus10000099 pacid=23149612 polypeptide=Lus10000099 locus=Lus10000099.g ID=Lus10000099.BGIv1.0 annot-version=v1.0 MSGQGFDTWILEVRGAGLSVWESDSKKVGQSAYAAAEQMESAAKSATNGAVSGNQKTESSQNMSTETEVSSVPEDPTGLATVWDESKLVSNLTDTFMRLS ESLSGFLGEGQSMIMSAKLFDQISTLLEDTQLSERLNELREKLLSLLETRQTSGVTSQIRDLSQKLVNIVEEGQRSVSPQLFDLQERLASTIEDFQKQLD LIVKYDWDFDHYLEEDVPTAMQYITTQCKPKDGKLLAIGHSMGGILLYARLSRCGKMHLFASIKQVPPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	0	1
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	1.0	0.8157
AT1G55520		ATTBP2, TBP2	A. THALIANA TATA BINDING PROTE...		Lus10002634 [exp]	4.6	0.7830
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	5.5	0.7590
AT5G18130			unknown protein		Lus10005702 [exp]	5.8	0.7974
AT4G18905			Transducin/WD40 repeat-like su...		Lus10004536 [exp]	7.3	0.7471
AT5G18130			unknown protein		Lus10020284 [exp]	10.8	0.7613
AT1G15060			Uncharacterised conserved prot...		Lus10034107 [exp]	12.0	0.7174
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10007479 [exp]	19.9	0.7526
AT1G76970			Target of Myb protein 1 (.1)		Lus10017220 [exp]	20.8	0.7243
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	21.1	0.6366

Compare expression of checked genes

Lus10000099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.