Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01150 52 / 1e-08 Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002693 [exp] 217 / 9e-74 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104100 [exp] 66 / 8e-15 ND / Potri.002G177700 [exp] 62 / 2e-13 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10000100 pacid=23182075 polypeptide=Lus10000100 locus=Lus10000100.g ID=Lus10000100.BGIv1.0 annot-version=v1.0 ATGGAGAGGGACAAAGAAGACAAGAAGGATAATGTGGGAGATCATGGAGAAGAAGAAGGGAGTAGTATGAGTAAGAGGAATATAACAAAGTGGTTGATAA GGAAGGATGGAACAGCGTCGTTTTGGTGTATCGGATGTGGAATGTTGAGCTTGGTGGGAGGTGTGCTTTTGGGTTGGTGGGAGTATAAGTATCATCGAAC CAACTCTCAACAATGGATGGTTCCCTTTGGTTTGATCTTGTTCGCAACTCCCTTGTTCGTTTGGCTCGCAATTATCGTCTCCGATTCTTGTAACGAAGAA GATAGTCTTGGTGGTGGAGGCGGAGTGTCACATGAGACAACGGATCAAGTCGTGGTGTGTGACTCGGTAGTGAGGATGAATAATAAAAATGTCACAACTT TATACCATATGAAAGGAGAAAATGTAGTGTGA
AA sequence Show only first row Show all	>Lus10000100 pacid=23182075 polypeptide=Lus10000100 locus=Lus10000100.g ID=Lus10000100.BGIv1.0 annot-version=v1.0 MERDKEDKKDNVGDHGEEEGSSMSKRNITKWLIRKDGTASFWCIGCGMLSLVGGVLLGWWEYKYHRTNSQQWMVPFGLILFATPLFVWLAIIVSDSCNEE DSLGGGGGVSHETTDQVVVCDSVVRMNNKNVTTLYHMKGENVV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10000100 [exp]	0	1
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	1.4	0.9728
AT1G16310			Cation efflux family protein (...		Lus10001768 [exp]	2.8	0.9694
					Lus10008233 [exp]	3.7	0.9503
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10008840 [exp]	5.2	0.9675
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10036603 [exp]	5.5	0.9660
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Lus10004222 [exp]	7.3	0.9619
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	8.0	0.9613
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10029430 [exp]	8.7	0.9250
AT3G47570			Leucine-rich repeat protein ki...		Lus10037310 [exp]	10.0	0.9412
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	10.4	0.9665

Compare expression of checked genes

Lus10000100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.